Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012766.1 Corchorus olitorius cultivar O-4 contig12799, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25163

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
341--396
29
1.9
29
85
7
78
19
21
7
51
1.70
2793--2820
2
14.0
2
100
0
56
50
0
0
50
1.00
3786--3852
21
3.2
21
64
16
57
50
14
5
28
1.66
3773--3853
42
1.9
42
97
0
153
46
16
7
29
1.73
3919--4028
56
2.0
56
90
0
175
39
1
23
35
1.66
5586--5620
1
35.0
1
100
0
70
100
0
0
0
0.00
13638--13671
2
17.0
2
100
0
68
50
0
0
50
1.00
15173--15206
2
17.0
2
100
0
68
50
0
0
50
1.00
17335--17586
131
2.0
127
89
6
395
49
1
11
37
1.48
18085--18135
22
2.2
24
83
16
72
41
0
0
58
0.98
18085--18133
25
2.0
25
84
8
64
40
0
0
59
0.98
19639--19669
9
3.6
9
95
4
55
45
0
9
45
1.36
20838--20886
24
2.0
24
100
0
98
46
8
16
28
1.75
24512--24564
28
1.9
27
84
3
70
32
15
13
39
1.85
24672--24735
31
2.1
31
88
2
94
43
10
10
34
1.75

Tables:   1

The End!