Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012769.1 Corchorus olitorius cultivar O-4 contig12802, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24445

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
794--833
21
2.0
19
85
9
53
45
20
5
30
1.72
1283--1353
22
3.2
22
67
21
67
30
1
25
42
1.64
1271--1358
44
2.0
44
100
0
176
34
2
25
38
1.68
1840--1908
29
2.3
29
80
5
75
40
21
10
27
1.85
5162--5422
106
2.5
106
87
5
352
40
8
8
41
1.67
6434--6497
31
2.1
29
82
5
74
51
1
10
35
1.47
6624--6670
18
2.5
19
86
13
71
57
0
0
42
0.98
6616--6667
19
2.6
21
85
14
74
55
0
0
44
0.99
8481--8512
14
2.1
16
88
11
50
37
28
6
28
1.81
16335--16362
9
3.1
9
100
0
56
42
35
10
10
1.74
21823--21849
11
2.5
11
100
0
54
0
7
0
92
0.38
23593--23683
16
5.8
16
83
6
98
7
14
40
37
1.74
23672--23714
6
7.3
6
81
5
52
2
18
48
30
1.60
23673--23714
12
3.6
12
80
6
59
2
19
50
28
1.60
24317--24349
2
16.5
2
93
0
57
48
3
0
48
1.17

Tables:   1

The End!