Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001277.1 Corchorus olitorius cultivar O-4 contig01277, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 867

Length: 1446
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34


Found at i:1281 original size:19 final size:19

Alignment explanation


    Indices: 1269--1306  Score: 58
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       1259 TACTTATTTT

                          *    
       1269 GGTCTTGTGTACTTGGTGA
          1 GGTCTTGTGTACTTAGTGA

                          *    
       1288 GGTCTTGTGTACTTGGTGA
          1 GGTCTTGTGTACTTAGTGA

       1307 ATACTTGCAC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.11, C:0.11, G:0.37, T:0.42


Consensus pattern (19 bp):   
GGTCTTGTGTACTTAGTGA
Done.