Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012777.1 Corchorus olitorius cultivar O-4 contig12810, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71097

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2955--2996
15
2.7
15
96
3
75
66
14
7
11
1.43
6803--6841
18
2.2
18
95
0
69
46
15
7
30
1.74
11146--11176
16
1.9
16
93
0
53
58
16
6
19
1.59
17224--17298
33
2.3
33
90
0
114
30
21
9
38
1.85
21947--22015
33
2.1
33
100
0
138
40
14
17
27
1.88
24083--24181
48
2.1
48
94
0
171
33
21
17
28
1.95
24211--24318
37
2.9
37
88
1
155
30
21
13
34
1.92
24216--24379
37
4.6
35
80
10
154
31
19
13
35
1.90
24216--24387
70
2.4
72
79
9
181
31
18
12
36
1.89
26269--26684
115
3.7
114
83
7
474
31
16
21
30
1.96
26269--26684
114
3.7
112
83
7
441
31
16
21
30
1.96
28573--28639
33
2.0
33
91
0
107
26
20
25
26
1.99
30216--30279
10
6.9
9
81
15
69
25
1
0
73
0.92
30208--30279
29
2.6
28
86
8
103
25
1
0
73
0.91
30209--30280
18
3.8
18
79
17
76
26
1
0
72
0.93
30209--30281
9
7.8
9
78
17
69
27
1
0
71
0.95
30285--30346
31
2.0
31
96
0
115
40
16
14
29
1.88
30486--30565
40
2.0
40
88
7
119
47
16
6
30
1.71
33410--33455
17
2.7
17
96
0
83
23
21
8
45
1.80
33984--34038
27
2.0
27
96
0
101
34
30
12
21
1.91
38089--39126
39
26.6
38
78
6
911
39
18
28
13
1.89
38095--39111
394
2.6
388
84
5
1221
39
18
28
13
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39588--40427
50
16.9
49
80
9
690
36
12
5
44
1.66
39728--40427
151
4.6
149
78
10
509
37
12
5
44
1.66
40390--40466
39
2.0
40
92
2
129
48
15
5
31
1.67
46703--46754
19
2.8
19
72
13
54
50
0
1
48
1.12
50900--50974
33
2.3
33
88
4
107
29
21
10
38
1.87
51822--51856
16
2.2
16
94
0
61
45
20
25
8
1.79
56624--56993
67
5.5
67
76
9
276
23
18
17
40
1.91
56819--57002
69
2.7
66
76
11
178
22
19
18
39
1.92
56892--57053
66
2.5
65
80
9
177
24
22
16
37
1.93
59062--59175
53
2.2
53
93
0
201
21
19
29
28
1.98
59721--59750
2
15.0
2
92
0
51
46
0
0
53
1.00
66233--66268
19
1.9
18
88
5
54
27
22
8
41
1.82

Tables:   1

The End!