Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012779.1 Corchorus olitorius cultivar O-4 contig12812, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71264

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2004--2043
21
1.9
21
100
0
80
40
20
5
35
1.74
8983--9089
41
2.6
41
80
5
128
14
25
22
37
1.93
16432--16473
22
1.9
22
95
0
75
21
7
26
45
1.77
18140--18187
21
2.3
22
85
10
73
31
12
8
47
1.71
20102--20130
2
14.5
2
100
0
58
51
0
0
48
1.00
31018--31114
48
2.0
48
92
4
160
29
16
11
42
1.83
33014--33142
56
2.3
56
97
1
240
41
25
10
21
1.86
34957--35011
2
27.5
2
96
0
101
52
0
47
0
1.00
51287--51316
2
15.0
2
100
0
60
50
0
0
50
1.00
56308--56338
2
15.5
2
93
0
53
51
3
0
45
1.17
58812--58864
27
2.0
28
85
7
74
16
24
11
47
1.80
62307--62333
12
2.2
12
100
0
54
55
7
22
14
1.64
67176--67239
16
4.0
17
80
8
64
51
32
12
3
1.55
67199--67253
16
3.5
15
85
7
74
54
29
9
7
1.58
67198--67253
15
3.6
16
83
11
71
53
28
10
7
1.62
68591--68615
11
2.3
11
100
0
50
56
0
0
44
0.99
71183--71217
2
18.0
2
94
5
63
51
0
0
48
1.00

Tables:   1

The End!