Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012780.1 Corchorus olitorius cultivar O-4 contig12813, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5701

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1638--2021
48
8.0
48
89
1
554
44
20
22
13
1.85
1638--2202
144
4.1
144
81
10
635
44
20
22
13
1.86
1991--2053
32
2.0
32
93
0
108
34
22
26
15
1.94
1942--2188
81
3.0
81
85
7
291
41
21
23
13
1.88
2023--2206
49
4.0
49
74
18
203
44
19
22
13
1.86
2025--2234
88
2.4
88
89
5
316
41
20
24
13
1.88
2077--2415
88
3.9
86
83
8
325
38
19
26
15
1.91
2208--2819
40
14.6
42
73
12
259
36
20
26
16
1.93
2198--2415
86
2.5
87
88
3
305
36
17
28
16
1.93
2341--2819
40
11.7
39
77
12
349
37
21
25
15
1.93
2450--2819
81
4.6
81
86
4
423
37
21
25
15
1.93
2472--2819
121
2.9
121
88
5
492
37
21
25
15
1.93
2833--2971
50
2.9
47
86
4
181
32
16
28
22
1.96
4914--4970
12
4.7
13
79
12
68
50
8
3
36
1.50
4914--4970
24
2.4
24
85
5
80
50
8
3
36
1.50

Tables:   1

The End!