Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012782.1 Corchorus olitorius cultivar O-4 contig12815, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64862

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1586--1614
2
14.5
2
100
0
58
48
0
0
51
1.00
2143--2177
18
1.9
18
88
0
52
74
0
0
25
0.82
2137--2191
4
14.5
4
77
7
53
74
0
1
23
0.91
2138--2191
15
3.7
15
75
18
51
75
0
1
22
0.89
2137--2188
26
2.0
26
81
7
61
75
0
1
23
0.91
2279--2372
27
3.8
27
69
28
75
62
2
8
26
1.35
2272--2381
46
2.5
42
81
11
139
61
2
9
26
1.39
2275--2371
46
2.1
46
94
0
167
62
2
8
26
1.34
2317--2383
19
3.3
19
73
15
62
64
0
7
28
1.21
2317--2383
15
4.4
15
70
20
50
64
0
7
28
1.21
2342--2383
11
3.7
11
83
3
57
66
0
7
26
1.17
4999--5279
155
1.8
153
83
4
377
53
3
8
33
1.49
6456--6767
40
7.8
40
87
5
398
30
25
8
35
1.86
6464--6767
81
3.8
80
88
3
443
30
25
7
35
1.85
6627--6769
20
7.2
21
61
11
68
30
26
8
34
1.86
7108--7188
41
2.0
41
87
0
117
28
27
7
37
1.84
7112--7193
20
4.1
20
71
3
56
30
25
7
36
1.83
7379--7444
33
2.0
33
84
0
87
31
9
28
30
1.88
16535--16671
72
1.9
72
89
3
213
27
8
23
40
1.84
23604--23638
1
35.0
1
100
0
70
100
0
0
0
0.00
25337--25389
25
2.2
23
83
6
61
32
39
16
11
1.85
25815--25844
11
2.7
11
94
0
51
56
23
10
10
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26318--26441
64
1.9
65
90
4
198
36
13
8
41
1.76
27184--27219
3
12.0
3
100
0
72
0
0
66
33
0.92
36560--37047
176
2.8
176
77
7
393
38
11
14
35
1.83
53326--53404
28
2.9
28
77
15
85
53
5
7
34
1.51
56182--56232
24
2.1
24
85
3
66
1
15
13
68
1.30
61268--61398
33
3.8
33
84
6
145
38
16
14
30
1.89
61415--61450
19
1.9
19
88
5
56
27
0
13
58
1.36
62073--62136
23
2.7
23
75
4
65
50
18
9
21
1.75
63510--63593
43
2.0
42
84
8
111
29
10
23
35
1.89
63693--63720
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!