Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012784.1 Corchorus olitorius cultivar O-4 contig12817, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9375
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31


Found at i:1370 original size:16 final size:17

Alignment explanation


    Indices: 1339--1384  Score: 51
    Period size: 17  Copynumber: 2.7  Consensus size: 17

       1329 AATTAAAATG

                             
       1339 ATAAAAATAAAATAATT
          1 ATAAAAATAAAATAATT

                       *     
       1356 ATAAAAA-AAATTAATT
          1 ATAAAAATAAAATAATT

                          
       1372 -TAATTAAATAAAA
          1 ATAA--AAATAAAA

       1385 ATAGAGTTTT


Statistics
Matches: 24,  Mismatches: 2, Indels: 5
        0.77            0.06        0.16

Matches are distributed among these distances:
  15    3  0.12
  16    8  0.33
  17   10  0.42
  18    3  0.12

ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30


Consensus pattern (17 bp):   
ATAAAAATAAAATAATT
Done.