Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012785.1 Corchorus olitorius cultivar O-4 contig12818, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69129

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9449--9489
15
2.7
15
88
0
55
39
9
9
41
1.71
15529--15627
21
4.5
22
78
7
85
42
11
15
31
1.81
15647--15717
22
3.2
22
78
11
74
40
7
12
39
1.70
20622--20670
22
2.3
23
79
13
59
28
6
20
44
1.75
20667--20952
22
13.1
20
70
16
103
38
8
16
36
1.80
20700--20836
70
1.9
71
85
8
190
37
7
16
38
1.77
20772--20934
64
2.5
66
80
8
179
36
11
17
34
1.86
20771--20956
87
2.1
88
85
4
243
38
11
16
33
1.85
20717--20957
22
10.8
22
73
7
182
38
9
16
34
1.82
21040--21115
22
3.5
22
78
7
82
35
9
19
35
1.84
21058--21593
22
24.9
22
67
13
152
35
7
18
38
1.80
21068--21183
61
1.9
59
85
3
160
32
6
20
40
1.77
21187--21652
22
21.5
22
68
11
174
36
8
17
37
1.80
21290--21588
44
6.8
44
72
14
195
36
8
17
38
1.80
21582--21631
21
2.3
21
83
10
57
44
6
16
34
1.72
21685--21735
20
2.4
21
87
6
68
43
5
11
39
1.66
23897--23990
45
2.2
44
86
7
131
39
20
4
36
1.72
41589--41637
25
2.0
25
91
0
80
12
28
20
38
1.89
42452--42503
25
2.1
26
82
7
63
44
32
0
23
1.54
42504--42552
25
2.0
25
87
0
71
14
26
20
38
1.91
48041--48065
13
1.9
13
100
0
50
72
0
0
28
0.86
51308--51332
7
3.6
7
100
0
50
64
0
36
0
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52730--52776
21
2.2
21
85
7
60
6
27
40
25
1.80
52995--53044
13
3.7
14
79
15
52
66
4
6
24
1.32
63617--63661
22
2.0
22
91
0
72
44
17
4
33
1.69
63792--63833
12
3.7
12
75
12
52
54
9
19
16
1.69

Tables:   1

The End!