Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012787.1 Corchorus olitorius cultivar O-4 contig12820, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2006
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29


Found at i:1120 original size:16 final size:15

Alignment explanation


    Indices: 1081--1123  Score: 68
    Period size: 15  Copynumber: 2.8  Consensus size: 15

       1071 AACAGAGGTT

                     *     
       1081 AACAGAAAATAATTA
          1 AACAGAAAACAATTA

                           
       1096 AACAGAAAACAATTA
          1 AACAGAAAACAATTA

                         
       1111 AACTAGAAAACAA
          1 AAC-AGAAAACAA

       1124 AACAAAGTAA


Statistics
Matches: 26,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  15   17  0.65
  16    9  0.35

ACGTcount: A:0.67, C:0.12, G:0.07, T:0.14


Consensus pattern (15 bp):   
AACAGAAAACAATTA
Done.