Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012788.1 Corchorus olitorius cultivar O-4 contig12821, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44143

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2311--2368
23
2.5
24
75
8
66
36
6
5
51
1.51
3230--3260
6
5.0
6
96
4
53
64
0
0
35
0.94
3230--3266
12
2.9
13
88
8
58
59
0
0
40
0.97
10454--10485
2
16.0
2
100
0
64
50
0
0
50
1.00
11194--11233
18
2.3
18
95
4
73
55
15
10
20
1.68
17054--17111
19
2.9
19
87
5
80
29
22
12
36
1.90
17100--17169
34
2.1
34
97
0
131
30
25
17
27
1.97
19161--19287
65
2.0
65
90
0
200
34
16
20
28
1.94
27376--27400
3
8.3
3
100
0
50
0
0
64
36
0.94
27713--27737
13
1.9
13
100
0
50
40
8
20
32
1.81
30608--30667
29
2.1
29
90
0
93
26
20
38
15
1.91
30810--30842
15
2.1
17
88
11
52
48
0
51
0
1.00
30807--30852
15
2.7
17
75
21
51
52
0
47
0
1.00
37967--38005
17
2.4
16
83
8
51
69
0
17
12
1.19
37952--38143
97
2.0
93
86
6
260
56
4
15
23
1.57

Tables:   1

The End!