Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012792.1 Corchorus olitorius cultivar O-4 contig12825, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7796
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29


Found at i:7088 original size:30 final size:29

Alignment explanation


    Indices: 7045--7101  Score: 89
    Period size: 30  Copynumber: 1.9  Consensus size: 29

       7035 TTAGGATTAG

                                         
       7045 TTATTTATGCTTTAATTTTCAA-TTTCCT
          1 TTATTTATGCTTTAATTTTCAAGTTTCCT

                                         
       7073 TTATCTTATGTCTTTAATTTTCAAGTTTC
          1 TTAT-TTATG-CTTTAATTTTCAAGTTTC

       7102 ATTAATAAAC


Statistics
Matches: 26,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
  28    4  0.15
  29    5  0.19
  30   13  0.50
  31    4  0.15

ACGTcount: A:0.21, C:0.14, G:0.05, T:0.60


Consensus pattern (29 bp):   
TTATTTATGCTTTAATTTTCAAGTTTCCT

Found at i:7336 original size:16 final size:14

Alignment explanation


    Indices: 7299--7328  Score: 60
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       7289 GGGGGTGTGA

                          
       7299 TTACTTGATAGGGT
          1 TTACTTGATAGGGT

                          
       7313 TTACTTGATAGGGT
          1 TTACTTGATAGGGT

              
       7327 TT
          1 TT

       7329 TTACTTGAAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.20, C:0.07, G:0.27, T:0.47


Consensus pattern (14 bp):   
TTACTTGATAGGGT
Done.