Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012797.1 Corchorus olitorius cultivar O-4 contig12830, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34452

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5976--6054
37
2.1
38
88
4
115
34
8
20
36
1.84
8291--8327
18
2.1
18
100
0
74
27
32
16
24
1.96
8616--8694
37
2.1
38
83
4
97
36
8
17
36
1.81
11250--11328
22
3.2
22
67
29
61
17
17
34
30
1.94
11250--11354
52
2.0
52
96
0
192
18
20
32
28
1.96
13288--13325
19
2.0
20
89
5
60
50
18
0
31
1.47
13288--13334
19
2.4
19
85
7
58
53
17
2
27
1.55
13367--13505
73
2.0
70
83
7
174
38
17
13
29
1.89
15672--15722
22
2.3
22
90
6
77
45
27
0
27
1.54
15948--15986
19
2.0
20
90
5
62
69
7
12
10
1.37
17603--17939
178
1.9
177
85
4
473
36
14
13
34
1.87
17603--17988
178
2.2
176
82
7
460
37
15
14
33
1.88
18371--18503
51
2.6
51
90
3
205
43
11
21
23
1.85
20611--20642
16
2.0
17
88
11
50
21
9
25
43
1.82
21106--21132
14
1.9
14
100
0
54
48
22
22
7
1.75
21939--22023
42
2.0
43
95
2
154
29
2
20
48
1.62
25370--25459
44
2.0
44
100
0
180
23
13
6
56
1.60
27823--27868
17
2.7
17
86
0
56
41
0
4
54
1.20
31590--31631
9
4.7
9
77
11
50
42
2
0
54
1.13

Tables:   1

The End!