Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012798.1 Corchorus olitorius cultivar O-4 contig12831, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17314

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--188
100
1.9
100
96
0
349
30
11
18
39
1.85
1812--1885
25
3.0
25
93
0
121
14
27
17
40
1.89
2370--2411
21
2.0
21
86
9
59
47
35
0
16
1.47
2374--2465
25
3.4
25
71
23
69
46
38
1
14
1.51
2464--2912
80
5.6
80
68
20
263
38
39
4
17
1.71
2595--2654
20
3.0
20
72
23
56
41
45
0
13
1.43
2625--2721
26
3.3
29
85
14
137
48
44
0
7
1.30
2625--2719
31
3.2
31
84
14
114
47
45
0
7
1.31
2625--2777
56
2.7
57
82
9
170
46
42
0
10
1.43
2676--2784
57
1.9
57
94
1
193
45
37
2
13
1.58
4294--4359
32
2.1
32
100
0
132
19
22
36
21
1.95
7140--7231
45
2.0
45
95
4
168
51
9
18
20
1.74
8023--8080
29
2.0
29
100
0
116
51
10
34
3
1.53
9599--9636
20
1.9
20
94
0
67
28
15
13
42
1.85
15030--15100
37
1.9
37
97
0
133
50
7
30
11
1.65

Tables:   1

The End!