Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012807.1 Corchorus olitorius cultivar O-4 contig12840, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21221

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
458--515
27
2.1
27
81
12
64
55
6
5
32
1.49
1852--1910
22
2.7
22
84
7
68
49
5
0
45
1.24
2006--2306
156
1.9
157
85
4
421
31
15
15
36
1.90
3339--3400
21
2.9
21
83
7
63
50
6
0
43
1.28
3867--3910
21
2.1
21
83
8
54
45
6
2
45
1.42
5304--5337
4
8.8
4
87
6
52
73
0
26
0
0.83
9172--9214
22
2.0
22
100
0
86
27
23
0
48
1.51
10792--10822
1
31.0
1
100
0
62
100
0
0
0
0.00
11596--11644
25
2.0
25
95
0
89
12
30
20
36
1.89
12921--12975
29
1.9
28
85
3
74
40
16
18
25
1.91
13130--13187
30
1.9
31
85
3
82
25
27
15
31
1.96
14015--14081
31
2.2
31
86
7
93
26
17
25
29
1.98
15694--15723
2
15.0
2
100
0
60
50
0
0
50
1.00
20383--20527
44
3.3
44
99
0
281
8
25
15
51
1.71
20380--20568
88
2.2
85
78
11
211
7
29
13
49
1.70

Tables:   1

The End!