Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012808.1 Corchorus olitorius cultivar O-4 contig12841, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66904

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4774--4809
19
1.9
18
88
5
54
27
22
8
41
1.82
9849--9909
30
2.0
30
84
6
79
49
1
18
31
1.57
11094--11135
21
2.0
21
85
0
57
16
42
26
14
1.86
20825--20855
12
2.5
12
94
5
53
67
9
12
9
1.41
26263--26329
24
2.8
24
81
4
82
25
19
0
55
1.43
26315--26375
12
4.8
12
75
25
54
21
6
0
72
1.07
26340--26398
23
2.6
23
78
7
68
18
5
0
76
0.97
26314--26393
40
2.0
41
87
7
119
21
7
0
71
1.10
30847--31462
54
11.4
54
85
2
749
25
16
21
37
1.93
31413--32011
54
11.2
54
83
6
603
27
18
22
31
1.97
31413--32011
106
5.6
108
80
6
619
27
18
22
31
1.97
31095--32011
162
5.7
161
77
8
671
26
17
22
33
1.96
33413--33479
4
17.5
4
72
14
52
26
5
1
65
1.24
33413--33492
15
5.3
15
71
20
60
26
7
1
65
1.27
33413--33479
27
2.5
27
79
15
77
26
5
1
65
1.24
33412--33600
8
24.6
8
69
10
92
24
12
0
62
1.34
33553--33600
4
12.0
4
78
8
53
20
6
0
72
1.05
33553--33595
12
3.6
12
83
0
59
20
4
0
74
1.00
38196--38251
3
18.3
3
96
3
103
33
0
0
66
0.92
38193--38256
6
9.9
7
88
11
61
35
0
0
64
0.94
38982--39022
19
2.2
19
95
0
73
29
14
26
29
1.95
45608--45657
22
2.4
21
83
12
59
32
12
30
26
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54106--54145
19
2.2
18
86
4
53
30
20
5
45
1.72
57688--57755
34
2.0
34
94
0
118
26
29
17
26
1.98
61213--61252
19
2.2
19
90
4
64
32
20
2
45
1.64
64431--64472
15
2.7
15
92
3
66
11
9
14
64
1.50
64798--64864
32
2.1
31
83
2
80
50
5
8
34
1.58

Tables:   1

The End!