Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012809.1 Corchorus olitorius cultivar O-4 contig12842, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4122
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30


Found at i:3837 original size:21 final size:21

Alignment explanation


    Indices: 3813--3892  Score: 142
    Period size: 21  Copynumber: 3.8  Consensus size: 21

       3803 ATTAGAGCAA

                                 
       3813 GTTCCAAGCTCATTGGAGAAG
          1 GTTCCAAGCTCATTGGAGAAG

                                 
       3834 GTTCCAAGCTCATTGGAGAAG
          1 GTTCCAAGCTCATTGGAGAAG

                                 
       3855 GTTCCAAGCTCATTGGAGAAG
          1 GTTCCAAGCTCATTGGAGAAG

               *   *         
       3876 GTTTCAATCTCATTGGA
          1 GTTCCAAGCTCATTGGA

       3893 ATTGCCTAAG


Statistics
Matches: 57,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  21   57  1.00

ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28


Consensus pattern (21 bp):   
GTTCCAAGCTCATTGGAGAAG

Done.