Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001281.1 Corchorus olitorius cultivar O-4 contig01281, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 778

Length: 1297
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25


Found at i:355 original size:28 final size:28

Alignment explanation


    Indices: 315--370  Score: 112
    Period size: 28  Copynumber: 2.0  Consensus size: 28

        305 TTCGTCAAAG

                                        
        315 TAAAAACTTAGTTCTGCGATTTCTTTGT
          1 TAAAAACTTAGTTCTGCGATTTCTTTGT

                                        
        343 TAAAAACTTAGTTCTGCGATTTCTTTGT
          1 TAAAAACTTAGTTCTGCGATTTCTTTGT

        371 ATCGAGGCGG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   28  1.00

ACGTcount: A:0.25, C:0.14, G:0.14, T:0.46


Consensus pattern (28 bp):   
TAAAAACTTAGTTCTGCGATTTCTTTGT
Done.