Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01012810.1 Corchorus olitorius cultivar O-4 contig12843, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41050
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.32
Found at i:8490 original size:16 final size:16
Alignment explanation
Indices: 8457--8514 Score: 68
Period size: 16 Copynumber: 3.7 Consensus size: 16
8447 TTTGGTAGTG
8457 AGGAAA-GAAATAGGA
1 AGGAAAGGAAATAGGA
8472 AGGAAAGGAAAT-GGCA
1 AGGAAAGGAAATAGG-A
8488 AGGAAAGGAAATAGTG-
1 AGGAAAGGAAATAG-GA
*
8504 AGGAAGGGAAA
1 AGGAAAGGAAA
8515 GGAAGTCACA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
15 8 0.21
16 28 0.74
17 1 0.03
18 1 0.03
ACGTcount: A:0.53, C:0.02, G:0.38, T:0.07
Consensus pattern (16 bp):
AGGAAAGGAAATAGGA
Found at i:9681 original size:15 final size:15
Alignment explanation
Indices: 9658--9706 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
9648 AAGAAAGCAT
*
9658 TTTCCTTCCTTCCCA
1 TTTCTTTCCTTCCCA
*
9673 TTTCTTTCC-TCCCC
1 TTTCTTTCCTTCCCA
9687 TCTTCTTTCCTTCCCA
1 T-TTCTTTCCTTCCCA
9703 TTTC
1 TTTC
9707 CTCCATACCA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
14 5 0.17
15 19 0.66
16 5 0.17
ACGTcount: A:0.04, C:0.45, G:0.00, T:0.51
Consensus pattern (15 bp):
TTTCTTTCCTTCCCA
Found at i:11262 original size:21 final size:21
Alignment explanation
Indices: 11236--11297 Score: 81
Period size: 20 Copynumber: 3.0 Consensus size: 21
11226 TTCCAATCAA
11236 TCAAGAACCCTAATTTGAATC
1 TCAAGAACCCTAATTTGAATC
**
11257 TCAAGAACCCTAA-TTGACCC
1 TCAAGAACCCTAATTTGAATC
*
11277 TCAAGAACCTTAAATTTGAAT
1 TCAAGAACCCT-AATTTGAAT
11298 TCGATAAGCT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
20 15 0.44
21 15 0.44
22 4 0.12
ACGTcount: A:0.39, C:0.24, G:0.10, T:0.27
Consensus pattern (21 bp):
TCAAGAACCCTAATTTGAATC
Found at i:20220 original size:21 final size:19
Alignment explanation
Indices: 20189--20236 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 19
20179 AAAAGTTCGG
20189 TTTTGCG-ATAAAAAAAAGT
1 TTTTGCGTATAAAAAAAA-T
20208 TTTTGCGTCATAAAAAAAAT
1 TTTTGCGT-ATAAAAAAAAT
20228 TTTATGCGT
1 TTT-TGCGT
20237 TTCTTAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.27
20 4 0.15
21 15 0.58
ACGTcount: A:0.40, C:0.08, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTTGCGTATAAAAAAAAT
Found at i:23095 original size:23 final size:21
Alignment explanation
Indices: 23068--23110 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
23058 ATCTGCCTGG
23068 CCACGCCCAGACCCATCCGCGCA
1 CCACGCCC-G-CCCATCCGCGCA
*
23091 CCACGCCCGGCCATCCGCGC
1 CCACGCCCGCCCATCCGCGC
23111 CACCTGCCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 10 0.53
22 1 0.05
23 8 0.42
ACGTcount: A:0.16, C:0.58, G:0.21, T:0.05
Consensus pattern (21 bp):
CCACGCCCGCCCATCCGCGCA
Found at i:25712 original size:22 final size:22
Alignment explanation
Indices: 25687--25738 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
25677 TCTACTTTAT
25687 TTCCATTTCTAGCTTTGGGCCA
1 TTCCATTTCTAGCTTTGGGCCA
25709 TTCCATTTCTAGCTTTGGGCCA
1 TTCCATTTCTAGCTTTGGGCCA
*
25731 TACCATTT
1 TTCCATTT
25739 GCAGTTGGGC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.15, C:0.27, G:0.15, T:0.42
Consensus pattern (22 bp):
TTCCATTTCTAGCTTTGGGCCA
Found at i:27755 original size:12 final size:12
Alignment explanation
Indices: 27732--27770 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
27722 AGCCACCAAG
27732 AAAATA-CAGAA
1 AAAATACCAGAA
27743 AAAATACCAGAA
1 AAAATACCAGAA
*
27755 AAAATACAAGAA
1 AAAATACCAGAA
27767 AAAA
1 AAAA
27771 GGGGAGTGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
11 6 0.23
12 20 0.77
ACGTcount: A:0.74, C:0.10, G:0.08, T:0.08
Consensus pattern (12 bp):
AAAATACCAGAA
Found at i:30519 original size:20 final size:20
Alignment explanation
Indices: 30494--30535 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
30484 GATCAAAAGA
30494 TTAACATTAGCTAGATCAAG
1 TTAACATTAGCTAGATCAAG
*
30514 TTAACATTAGCTAGATCTAG
1 TTAACATTAGCTAGATCAAG
30534 TT
1 TT
30536 GCGGATTGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (20 bp):
TTAACATTAGCTAGATCAAG
Found at i:34407 original size:29 final size:29
Alignment explanation
Indices: 34373--34630 Score: 313
Period size: 29 Copynumber: 8.9 Consensus size: 29
34363 TTCGCACGCT
*
34373 CAGGGGAATTTTGGTCATTTTTGCATATC
1 CAGGGGCATTTTGGTCATTTTTGCATATC
** * * *
34402 TGGGGGCATTTTGGTTATTTTTACACATC
1 CAGGGGCATTTTGGTCATTTTTGCATATC
**
34431 CAGGGGCATTTTGGTCATTTTCACATATC
1 CAGGGGCATTTTGGTCATTTTTGCATATC
* *
34460 CAGGGTCATTTTGGTCATTTTTGCACATC
1 CAGGGGCATTTTGGTCATTTTTGCATATC
*
34489 CAGGGGCATTTTGGTCATTTTTGCACATC
1 CAGGGGCATTTTGGTCATTTTTGCATATC
*
34518 CGGGGGCATTTTGGTCATTTTTGCATATC
1 CAGGGGCATTTTGGTCATTTTTGCATATC
34547 C-GGGGACATTTTGGTCATTTTTGCATATC
1 CAGGGG-CATTTTGGTCATTTTTGCATATC
* * * * * *
34576 CGGGGGCATTTCGGTCATCTTTACACATT
1 CAGGGGCATTTTGGTCATTTTTGCATATC
* *
34605 CTGGGGCAGTTTGGTCA-TTTTGCATA
1 CAGGGGCATTTTGGTCATTTTTGCATA
34631 CTTTAGGTTC
Statistics
Matches: 198, Mismatches: 29, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
28 10 0.05
29 184 0.93
30 4 0.02
ACGTcount: A:0.17, C:0.18, G:0.24, T:0.40
Consensus pattern (29 bp):
CAGGGGCATTTTGGTCATTTTTGCATATC
Found at i:34470 original size:58 final size:58
Alignment explanation
Indices: 34373--34630 Score: 349
Period size: 58 Copynumber: 4.5 Consensus size: 58
34363 TTCGCACGCT
* * *
34373 CAGGGGAATTTTGGTCATTTTTGCATATCTGGGGGCATTTTGGTTATTTTTACACATC
1 CAGGGGCATTTTGGTCATTTTTGCATATCCGGGGGCATTTTGGTCATTTTTACACATC
** * * *
34431 CAGGGGCATTTTGGTCATTTTCACATATCCAGGGTCATTTTGGTCATTTTTGCACATC
1 CAGGGGCATTTTGGTCATTTTTGCATATCCGGGGGCATTTTGGTCATTTTTACACATC
* * *
34489 CAGGGGCATTTTGGTCATTTTTGCACATCCGGGGGCATTTTGGTCATTTTTGCATATC
1 CAGGGGCATTTTGGTCATTTTTGCATATCCGGGGGCATTTTGGTCATTTTTACACATC
* * *
34547 C-GGGGACATTTTGGTCATTTTTGCATATCCGGGGGCATTTCGGTCATCTTTACACATT
1 CAGGGG-CATTTTGGTCATTTTTGCATATCCGGGGGCATTTTGGTCATTTTTACACATC
* *
34605 CTGGGGCAGTTTGGTCA-TTTTGCATA
1 CAGGGGCATTTTGGTCATTTTTGCATA
34631 CTTTAGGTTC
Statistics
Matches: 177, Mismatches: 21, Indels: 5
0.87 0.10 0.02
Matches are distributed among these distances:
57 13 0.07
58 160 0.90
59 4 0.02
ACGTcount: A:0.17, C:0.18, G:0.24, T:0.40
Consensus pattern (58 bp):
CAGGGGCATTTTGGTCATTTTTGCATATCCGGGGGCATTTTGGTCATTTTTACACATC
Found at i:34651 original size:87 final size:86
Alignment explanation
Indices: 34380--34630 Score: 358
Period size: 87 Copynumber: 2.9 Consensus size: 86
34370 GCTCAGGGGA
* *
34380 ATTTTGGTCATTTTTGCATATCTGGGGGCATTTTGGTTATTTTTACACATCCAGGGGCATTTTGG
1 ATTTTGGTCATTTTTGCATATCCGGGGGCATTTTGGTCATTTTTACACATCCAGGGGCATTTTGG
*
34445 TCATTTTCACATATCCAGGGTC
66 TCATTTT-GCATATCCAGGGTC
* * * *
34467 ATTTTGGTCATTTTTGCACATCCAGGGGCATTTTGGTCATTTTTGCACATCCGGGGGCATTTTGG
1 ATTTTGGTCATTTTTGCATATCCGGGGGCATTTTGGTCATTTTTACACATCCAGGGGCATTTTGG
* *
34532 TCATTTTTGCATATCCGGGGAC
66 TCA-TTTTGCATATCCAGGGTC
* * * * *
34554 ATTTTGGTCATTTTTGCATATCCGGGGGCATTTCGGTCATCTTTACACATTCTGGGGCAGTTTGG
1 ATTTTGGTCATTTTTGCATATCCGGGGGCATTTTGGTCATTTTTACACATCCAGGGGCATTTTGG
34619 TCATTTTGCATA
66 TCATTTTGCATA
34631 CTTTAGGTTC
Statistics
Matches: 146, Mismatches: 17, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
86 9 0.06
87 133 0.91
88 4 0.03
ACGTcount: A:0.17, C:0.18, G:0.24, T:0.41
Consensus pattern (86 bp):
ATTTTGGTCATTTTTGCATATCCGGGGGCATTTTGGTCATTTTTACACATCCAGGGGCATTTTGG
TCATTTTGCATATCCAGGGTC
Found at i:35412 original size:2 final size:2
Alignment explanation
Indices: 35405--35430 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
35395 TTCTTCTTTC
35405 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
35431 GTGGGTTCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:35983 original size:60 final size:60
Alignment explanation
Indices: 35910--36429 Score: 751
Period size: 60 Copynumber: 8.6 Consensus size: 60
35900 TTTCCCTTTT
*
35910 CTGTTCGAGGTCTCTGTTAGAGGGTTTTCAATTCAAAATCTTACCTTTTTTTTTAAAATC
1 CTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTACCTTTTTTTTTAAAATC
* * * *
35970 CTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTCATCTTGTTTTCTAAAATC
1 CTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTACCTTTTTTTTTAAAATC
* *
36030 CTGTTCGAGGTCTCTATTAGAGAGTTTTCAATTCAAAATCTTACCTTGTTTTTTTTTTAAATC
1 CTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTACC---TTTTTTTTTAAAATC
* * * * * *
36093 CTGTTCGAGGTCTCTGTTAGAGAATTCTCAATTCAAAATCTCATCTTGTTTTCTAAAATC
1 CTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTACCTTTTTTTTTAAAATC
* *
36153 CTGTTCGAGGTCTATGTTAGAGAGTTTTCAATTCAAAATCTTACCTTGTTTTTTAAAATC
1 CTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTACCTTTTTTTTTAAAATC
* *
36213 CTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTCATCTTGTTTTCTTTTAAAATC
1 CTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTA-CCT-TTTT-TTTTAAAATC
* * * *
36276 CTGTTCGAGGTCTCTATTAGAGAGTTTTCAATTCAAAATCTAACC-TTGTTTCTAAAATC
1 CTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTACCTTTTTTTTTAAAATC
* *
36335 CTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTATC-TTGTTTTT--AATC
1 CTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTACCTTTTTTTTTAAAATC
36392 CTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAA
1 CTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAA
36430 ATTATCTTGT
Statistics
Matches: 416, Mismatches: 38, Indels: 15
0.89 0.08 0.03
Matches are distributed among these distances:
57 42 0.10
59 58 0.14
60 207 0.50
61 2 0.00
62 4 0.01
63 103 0.25
ACGTcount: A:0.25, C:0.17, G:0.15, T:0.43
Consensus pattern (60 bp):
CTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTACCTTTTTTTTTAAAATC
Found at i:36133 original size:123 final size:123
Alignment explanation
Indices: 35910--36442 Score: 833
Period size: 123 Copynumber: 4.4 Consensus size: 123
35900 TTTCCCTTTT
*
35910 CTGTTCGAGGTCTCTGTTAGAGGGTTTTCAATTCAAAATCTTACC---TTTTTTTTTAAAATCCT
1 CTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTACCTTGTTTTTTTTTAAAATCCT
35972 GTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTCATCTTGTTTTCTAAAATC
66 GTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTCATCTTGTTTTCTAAAATC
* *
36030 CTGTTCGAGGTCTCTATTAGAGAGTTTTCAATTCAAAATCTTACCTTGTTTTTTTTTTAAATCCT
1 CTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTACCTTGTTTTTTTTTAAAATCCT
* *
36095 GTTCGAGGTCTCTGTTAGAGAATTCTCAATTCAAAATCTCATCTTGTTTTCTAAAATC
66 GTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTCATCTTGTTTTCTAAAATC
*
36153 CTGTTCGAGGTCTATGTTAGAGAGTTTTCAATTCAAAATCTTACCTTG---TTTTTTAAAATCCT
1 CTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTACCTTGTTTTTTTTTAAAATCCT
36215 GTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTCATCTTGTTTTCTTTTAAAATC
66 GTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTCATCTTGTTTTC---TAAAATC
* * *
36276 CTGTTCGAGGTCTCTATTAGAGAGTTTTCAATTCAAAATCTAACCTTG----TTTCTAAAATCCT
1 CTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTACCTTGTTTTTTTTTAAAATCCT
*
36337 GTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTATCTTGTTTT-T--AATC
66 GTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTCATCTTGTTTTCTAAAATC
* *
36392 CTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAA-ATTATCTTGTTTT
1 CTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTACCTTGTTTT
36443 AAACTCCTAG
Statistics
Matches: 384, Mismatches: 19, Indels: 21
0.91 0.04 0.05
Matches are distributed among these distances:
115 6 0.02
116 41 0.11
118 1 0.00
120 105 0.27
122 61 0.16
123 170 0.44
ACGTcount: A:0.25, C:0.17, G:0.15, T:0.44
Consensus pattern (123 bp):
CTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTACCTTGTTTTTTTTTAAAATCCT
GTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTCATCTTGTTTTCTAAAATC
Found at i:36218 original size:183 final size:183
Alignment explanation
Indices: 35910--36442 Score: 860
Period size: 183 Copynumber: 2.9 Consensus size: 183
35900 TTTCCCTTTT
* * * *
35910 CTGTTCGAGGTCTCTGTTAGAGGGTTTTCAATTCAAAATCTTACCTTTTTTTTTAAAATCCTGTT
1 CTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTAACCTTGTTTTCTAAAATCCTGTT
* *
35975 CGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTCATCTTGTTTTCTAAAATCCTGTTCGAGG
66 CGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTATCTTGTTTTTTAAAATCCTGTTCGAGG
* * * *
36040 TCTCTATTAGAGAGTTTTCAATTCAAAATCTTACCTTGTTTTTTTTTTAAATC
131 TCTCTGTTAGAGAGTTTTCAATTCAAAATCTTATCTTGTTTTCTTTTAAAATC
* * * *
36093 CTGTTCGAGGTCTCTGTTAGAGAATTCTCAATTCAAAATCTCATCTTGTTTTCTAAAATCCTGTT
1 CTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTAACCTTGTTTTCTAAAATCCTGTT
* *
36158 CGAGGTCTATGTTAGAGAGTTTTCAATTCAAAATCTTACCTTGTTTTTTAAAATCCTGTTCGAGG
66 CGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTATCTTGTTTTTTAAAATCCTGTTCGAGG
*
36223 TCTCTGTTAGAGAGTTTTCAATTCAAAATCTCATCTTGTTTTCTTTTAAAATC
131 TCTCTGTTAGAGAGTTTTCAATTCAAAATCTTATCTTGTTTTCTTTTAAAATC
*
36276 CTGTTCGAGGTCTCTATTAGAGAGTTTTCAATTCAAAATCTAACCTTG-TTTCTAAAATCCTGTT
1 CTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTAACCTTGTTTTCTAAAATCCTGTT
36340 CGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTATCTTG-TTTTT--AATCCTGTTCGAGG
66 CGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTATCTTGTTTTTTAAAATCCTGTTCGAGG
*
36402 TCTCTGTTAGAGAGTTTTCAATTCAAAA-ATTATCTTGTTTT
131 TCTCTGTTAGAGAGTTTTCAATTCAAAATCTTATCTTGTTTT
36443 AAACTCCTAG
Statistics
Matches: 325, Mismatches: 25, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
178 11 0.03
179 42 0.13
181 5 0.02
182 57 0.18
183 210 0.65
ACGTcount: A:0.25, C:0.17, G:0.15, T:0.44
Consensus pattern (183 bp):
CTGTTCGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTAACCTTGTTTTCTAAAATCCTGTT
CGAGGTCTCTGTTAGAGAGTTTTCAATTCAAAATCTTATCTTGTTTTTTAAAATCCTGTTCGAGG
TCTCTGTTAGAGAGTTTTCAATTCAAAATCTTATCTTGTTTTCTTTTAAAATC
Found at i:36745 original size:29 final size:29
Alignment explanation
Indices: 36710--36940 Score: 286
Period size: 29 Copynumber: 8.0 Consensus size: 29
36700 TCAACCATTC
36710 GCACATCCAGGGGCATTTTGGTCATTTTT
1 GCACATCCAGGGGCATTTTGGTCATTTTT
36739 GCACATCCAGGGGCATTTTGGTCATTTTT
1 GCACATCCAGGGGCATTTTGGTCATTTTT
36768 GCACATCCAGGGGCATTTTGGTCATTTTT
1 GCACATCCAGGGGCATTTTGGTCATTTTT
* *
36797 GCACA-CCTGGAGGAATTTTGGTCATTTTT
1 GCACATCCAGG-GGCATTTTGGTCATTTTT
* **
36826 GCATAT-TTGGGGACATTTTGGTCATTTTT
1 GCACATCCAGGGG-CATTTTGGTCATTTTT
* *
36855 GCATATCCGGGGGCATTTTGGTCATTTTT
1 GCACATCCAGGGGCATTTTGGTCATTTTT
* * * * *
36884 ACACATTCGGGGGCATTTCGGTCATCTTT
1 GCACATCCAGGGGCATTTTGGTCATTTTT
* * * *
36913 ACACATTCTGGGGCAGTTTGGTCATTTT
1 GCACATCCAGGGGCATTTTGGTCATTTT
36941 GCATACTTTA
Statistics
Matches: 182, Mismatches: 16, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
28 6 0.03
29 172 0.95
30 4 0.02
ACGTcount: A:0.17, C:0.19, G:0.25, T:0.39
Consensus pattern (29 bp):
GCACATCCAGGGGCATTTTGGTCATTTTT
Done.