Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012818.1 Corchorus olitorius cultivar O-4 contig12851, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9401
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:223 original size:22 final size:21

Alignment explanation


    Indices: 195--241  Score: 58
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        185 AAGTCAATTT

                       *      *   
        195 CCTGTTTAAATGCAATTTGATC
          1 CCTGTTT-AATACAATTTAATC

                    *            
        217 CCTGTTTATTACAATTTAATC
          1 CCTGTTTAATACAATTTAATC

                
        238 CCTG
          1 CCTG

        242 ATTTCAGGAA


Statistics
Matches: 22,  Mismatches: 3, Indels: 1
        0.85            0.12        0.04

Matches are distributed among these distances:
  21   15  0.68
  22    7  0.32

ACGTcount: A:0.26, C:0.21, G:0.11, T:0.43


Consensus pattern (21 bp):   
CCTGTTTAATACAATTTAATC
Done.