Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012819.1 Corchorus olitorius cultivar O-4 contig12852, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3541
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:83 original size:6 final size:6

Alignment explanation


    Indices: 72--99  Score: 56
    Period size: 6  Copynumber: 4.7  Consensus size: 6

         62 AGCATTACTC

                                            
         72 TTTTCT TTTTCT TTTTCT TTTTCT TTTT
          1 TTTTCT TTTTCT TTTTCT TTTTCT TTTT

        100 AATCCGTATG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   22  1.00

ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86


Consensus pattern (6 bp):   
TTTTCT

Done.