Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012820.1 Corchorus olitorius cultivar O-4 contig12853, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4887

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
240--268
4
7.5
4
92
7
51
55
0
0
44
0.99
2361--2399
2
19.0
2
89
5
60
46
2
0
51
1.14
3527--3740
22
9.7
21
73
8
124
35
9
16
37
1.82
3523--3676
66
2.3
65
83
8
186
36
10
16
36
1.83
3570--3727
68
2.4
65
79
9
167
36
10
17
36
1.83
3907--4073
22
7.6
21
71
14
81
41
11
14
32
1.82
4306--4379
38
1.9
38
91
0
121
41
8
17
32
1.79
4155--4649
22
22.7
21
70
14
231
37
10
15
35
1.82
4856--4887
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!