Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012822.1 Corchorus olitorius cultivar O-4 contig12855, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24594

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2736--2773
20
2.0
20
89
5
60
47
21
0
31
1.51
5521--5582
25
2.5
25
97
0
115
29
22
4
43
1.74
8449--8640
40
4.6
42
83
7
241
31
15
17
35
1.92
12080--12141
31
2.0
31
96
0
115
38
27
16
17
1.91
12754--13123
61
6.2
60
86
5
400
25
21
14
38
1.91
12754--13127
123
3.1
120
82
7
415
25
21
14
38
1.91
12789--13133
58
5.8
60
86
7
393
25
22
14
37
1.92
13571--13808
65
3.7
62
79
5
233
27
21
13
37
1.91
13574--13819
129
1.9
129
81
5
300
26
21
14
38
1.91
13571--13821
64
3.9
64
80
2
279
26
21
13
38
1.91
15115--15144
15
1.9
16
93
6
53
0
16
3
80
0.85
15232--15285
22
2.4
23
81
9
67
27
14
9
48
1.75
15842--15892
14
3.6
14
77
15
52
37
13
5
43
1.69
15948--15996
22
2.2
22
85
7
64
2
16
2
79
0.92
19053--19128
28
2.8
28
81
2
82
25
22
13
39
1.90

Tables:   1

The End!