Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012824.1 Corchorus olitorius cultivar O-4 contig12857, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60606

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1181--1223
22
1.9
23
90
4
70
48
16
16
18
1.81
3810--3844
2
17.5
2
100
0
70
51
0
0
48
1.00
10513--10593
42
1.9
42
85
5
110
9
17
13
59
1.61
20280--20309
2
15.0
2
100
0
60
50
0
0
50
1.00
23094--23121
14
2.0
14
100
0
56
28
0
14
57
1.38
23589--23629
19
2.2
19
86
4
57
63
0
0
36
0.95
29179--29260
19
4.3
19
80
7
87
63
0
9
26
1.25
29185--29259
4
19.5
4
72
8
66
64
0
8
28
1.22
29121--29259
31
4.5
31
74
14
58
64
0
10
25
1.30
29162--29260
26
3.9
27
79
15
104
62
1
10
26
1.33
29135--29259
15
8.3
15
68
13
78
64
0
9
24
1.28
29143--29248
8
13.5
8
73
19
73
64
0
10
24
1.31
29615--29644
10
3.0
10
90
0
51
46
13
0
40
1.43
30950--31136
53
3.5
54
78
7
209
30
20
18
30
1.96
30944--31319
54
6.7
54
76
9
308
31
21
18
28
1.97
31063--31301
120
2.0
119
84
2
309
33
22
17
26
1.96
31182--31395
54
4.0
51
80
11
164
29
22
19
28
1.98
31296--31409
54
2.1
54
86
0
156
30
21
18
28
1.97
31958--31998
22
1.9
21
95
5
73
56
2
7
34
1.40
31962--32011
24
2.1
24
96
0
91
56
4
6
34
1.43
34209--34264
29
2.0
28
82
3
67
44
12
21
21
1.85
35845--36217
192
1.9
192
98
0
728
33
16
22
27
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45136--45165
7
4.3
7
100
0
60
13
0
13
73
1.10
48349--48393
22
2.0
22
100
0
90
60
13
17
8
1.58
51420--51453
2
17.0
2
100
0
68
50
0
0
50
1.00
52926--53181
132
1.9
131
89
3
399
50
2
10
37
1.49
60552--60606
25
2.3
24
87
6
76
29
5
3
61
1.35

Tables:   1

The End!