Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012825.1 Corchorus olitorius cultivar O-4 contig12858, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118067

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
178--211
17
2.0
17
94
0
59
44
5
0
50
1.26
527--604
3
26.0
3
100
0
156
66
0
0
33
0.92
1227--1288
23
2.5
25
85
10
92
29
19
9
41
1.83
8164--8190
13
2.1
13
100
0
54
48
0
14
37
1.45
10943--11009
31
2.2
31
92
5
111
47
11
19
20
1.81
11130--11208
31
2.5
31
91
0
122
35
17
10
36
1.84
11185--11264
29
2.7
29
82
3
88
28
16
13
41
1.86
12084--12114
16
1.9
16
100
0
62
32
19
0
48
1.49
12186--12218
16
2.1
17
88
11
52
48
0
0
51
1.00
12249--12390
31
4.6
31
83
1
142
40
13
14
31
1.85
12520--12585
31
2.2
29
89
5
96
19
18
13
48
1.81
12520--12594
29
2.5
31
85
8
84
21
18
13
46
1.83
14826--14906
40
2.0
40
97
0
153
34
18
22
24
1.96
18785--18871
42
2.1
42
93
0
147
40
19
4
35
1.72
19123--19465
119
2.9
117
89
6
529
33
7
23
34
1.83
19678--19887
105
2.0
105
92
0
348
42
6
10
40
1.65
19886--19929
8
5.2
8
84
10
61
50
0
25
25
1.50
21023--21069
7
6.7
7
100
0
94
27
14
29
27
1.96
22774--22806
16
2.1
16
100
0
66
33
12
30
24
1.91
25774--25799
7
3.7
7
100
0
52
26
46
11
15
1.80
36468--36518
17
3.1
16
80
8
57
35
19
21
23
1.96
37228--37264
2
19.0
2
94
5
67
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38361--38418
28
2.2
28
78
9
68
50
29
10
10
1.70
47661--47701
7
5.9
7
97
0
73
29
14
26
29
1.95
48380--48411
6
5.3
6
100
0
64
31
34
0
34
1.58
48664--48708
24
2.0
23
86
8
65
35
4
4
55
1.40
61337--61390
25
2.0
29
86
13
80
44
12
0
42
1.43
62399--62467
28
2.5
27
77
9
77
37
4
27
30
1.76
67369--67399
11
2.9
11
95
4
55
16
0
0
83
0.64
67371--67414
15
2.9
15
86
6
54
15
4
0
79
0.89
67548--67609
17
3.6
17
84
0
79
6
35
40
17
1.76
67543--67620
34
2.4
33
86
4
104
5
37
39
17
1.72
80112--80215
28
3.7
27
73
20
88
32
10
8
48
1.68
80112--80210
29
3.5
28
76
19
82
34
11
8
46
1.69
80124--80213
28
3.1
31
80
18
104
30
10
10
50
1.69
89581--89624
21
2.1
21
87
8
63
25
2
9
63
1.35
92572--92622
15
3.1
15
75
20
57
17
9
7
64
1.46
104141--104169
15
2.0
15
93
6
51
75
6
3
13
1.13
107206--107278
21
3.4
21
76
1
74
12
17
47
21
1.80
108874--108909
19
1.9
18
88
5
54
41
8
22
27
1.82
116386--116439
21
2.5
22
82
11
60
48
12
22
16
1.80

Tables:   1

The End!