Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012829.1 Corchorus olitorius cultivar O-4 contig12862, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34898

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
850--884
11
3.2
11
91
0
61
80
17
2
0
0.84
3552--3576
2
12.5
2
100
0
50
52
0
0
48
1.00
5864--5941
39
2.0
40
89
2
122
29
10
25
34
1.89
5904--6139
46
5.1
46
84
6
287
32
15
20
31
1.94
5904--6139
94
2.5
92
81
6
287
32
15
20
31
1.94
6536--6680
77
1.9
78
91
1
238
33
17
20
28
1.95
6873--7003
42
3.1
42
90
2
201
28
32
16
22
1.96
6873--6981
23
5.1
23
65
18
74
28
30
16
24
1.97
6884--7007
19
6.1
19
69
14
77
29
32
16
20
1.95
7052--7122
14
4.9
14
79
6
79
32
30
16
19
1.95
7040--7122
28
2.9
28
83
3
94
33
28
15
21
1.94
7108--7176
29
2.6
26
70
14
68
28
23
17
30
1.97
7164--7204
14
2.9
14
85
0
55
39
31
12
17
1.86
7139--7339
53
3.8
53
89
1
294
28
28
17
24
1.98
7139--7350
107
2.0
106
88
0
316
29
28
17
24
1.97
7301--7387
39
2.2
39
93
0
147
28
31
17
22
1.97
12630--12660
13
2.5
13
94
5
55
61
0
0
38
0.96
14445--14473
15
1.9
15
100
0
58
41
3
0
55
1.17
14713--14757
17
2.6
17
85
0
63
4
24
48
22
1.68
14763--14805
16
2.7
16
81
0
59
9
16
39
34
1.80
18170--18204
2
17.5
2
93
0
61
0
51
0
48
1.00

Tables:   1

The End!