Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001283.1 Corchorus olitorius cultivar O-4 contig01283, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 928

Length: 1547
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36


Found at i:740 original size:20 final size:20

Alignment explanation


    Indices: 715--763  Score: 89
    Period size: 20  Copynumber: 2.5  Consensus size: 20

        705 TTTGGTTGGG

                                
        715 GGTGATCTTTGATCACCTGT
          1 GGTGATCTTTGATCACCTGT

                  *             
        735 GGTGATTTTTGATCACCTGT
          1 GGTGATCTTTGATCACCTGT

                     
        755 GGTGATCTT
          1 GGTGATCTT

        764 GGTAGGTGAT


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  20   27  1.00

ACGTcount: A:0.14, C:0.16, G:0.27, T:0.43


Consensus pattern (20 bp):   
GGTGATCTTTGATCACCTGT

Found at i:925 original size:17 final size:17

Alignment explanation


    Indices: 888--935  Score: 60
    Period size: 17  Copynumber: 2.8  Consensus size: 17

        878 GTAATCTTTG

                 *         **
        888 ATCACCGGTGATCTTGC
          1 ATCACTGGTGATCTTAA

                             
        905 ATCACTGGTGATCTTAA
          1 ATCACTGGTGATCTTAA

                  *       
        922 ATCACTAGTGATCT
          1 ATCACTGGTGATCT

        936 GGGGGGTGAT


Statistics
Matches: 27,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  17   27  1.00

ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33


Consensus pattern (17 bp):   
ATCACTGGTGATCTTAA
Done.