Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012833.1 Corchorus olitorius cultivar O-4 contig12866, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87294

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4055--4084
15
2.0
15
100
0
60
46
33
6
13
1.69
4504--4547
22
2.0
22
95
0
79
47
4
22
25
1.70
12944--13060
44
2.7
44
82
2
119
38
13
11
35
1.82
12982--13059
22
3.5
22
84
6
95
41
14
11
33
1.81
12997--13091
22
4.3
22
78
4
84
43
10
11
34
1.76
12982--13077
44
2.2
44
84
3
122
42
12
10
34
1.77
13151--13208
19
2.8
20
82
10
73
36
6
27
29
1.83
13254--13638
22
17.5
22
76
6
325
34
12
18
34
1.89
18889--18987
22
4.5
23
81
7
98
41
15
10
33
1.80
18864--19019
44
3.5
43
78
5
109
43
13
10
32
1.78
18929--19009
22
3.7
21
76
15
67
44
14
7
33
1.73
18866--19027
66
2.5
65
76
9
159
43
12
10
33
1.77
19207--19432
22
10.3
22
72
6
145
31
12
17
38
1.87
24459--24533
29
2.5
30
84
6
98
30
28
12
29
1.92
28835--28963
64
2.0
64
96
0
240
41
21
10
26
1.86
42125--42522
197
2.0
199
98
1
764
45
19
11
22
1.83
45548--45613
34
1.9
34
96
0
123
22
24
10
42
1.85
49415--49474
25
2.4
25
94
0
102
53
0
16
30
1.44
50791--50960
2
87.0
2
73
15
97
53
0
4
41
1.22
50791--50963
11
16.0
11
74
12
135
53
0
4
41
1.21
50791--50963
42
4.1
40
91
7
220
53
0
4
41
1.21
65216--65261
14
3.4
14
80
19
53
54
8
6
30
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65229--65271
14
3.0
14
82
3
50
46
9
6
37
1.63
65565--65597
14
2.4
14
94
0
57
81
0
18
0
0.68
66825--67462
8
81.8
8
67
18
51
31
20
3
45
1.67
66836--66893
24
2.4
24
91
0
89
31
24
1
43
1.64
66857--66887
16
1.9
16
100
0
62
29
25
0
45
1.54
66881--67453
14
38.9
14
67
24
123
31
20
3
44
1.67
66859--67694
22
37.5
22
72
19
375
30
20
4
44
1.71
66910--67510
64
9.5
61
81
12
425
31
20
3
44
1.69
67494--67703
8
26.6
8
74
10
96
29
21
6
42
1.78
67621--67694
25
2.9
26
88
7
107
29
22
6
40
1.80
68331--68359
2
14.5
2
100
0
58
51
0
0
48
1.00
69807--69906
35
3.0
35
88
7
138
33
25
25
17
1.96
71632--72162
68
7.9
68
81
6
573
21
20
15
42
1.88
72335--72374
6
6.3
6
88
11
62
50
2
15
32
1.57
77047--77130
45
1.9
43
94
0
132
36
23
5
33
1.79
77419--77473
13
4.3
13
77
13
69
54
16
7
21
1.66
79663--79712
26
1.9
26
100
0
100
28
20
24
28
1.99

Tables:   1

The End!