Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012836.1 Corchorus olitorius cultivar O-4 contig12869, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1817
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32


Found at i:1497 original size:27 final size:28

Alignment explanation


    Indices: 1467--1525  Score: 79
    Period size: 26  Copynumber: 2.2  Consensus size: 28

       1457 GAAAAACGCA

                                   *     
       1467 AAAACTTTTTTTTTAT-GACGCAGAA-AC
          1 AAAACTTTTTTTTT-TCGACGCAAAACAC

                                        
       1494 AAAA-TTTTTTTTTTCGACGCAAAACAC
          1 AAAACTTTTTTTTTTCGACGCAAAACAC

                 
       1521 AAAAC
          1 AAAAC

       1526 AAATTTTTTT


Statistics
Matches: 28,  Mismatches: 1, Indels: 5
        0.82            0.03        0.15

Matches are distributed among these distances:
  25    1  0.04
  26   17  0.61
  27   10  0.36

ACGTcount: A:0.41, C:0.17, G:0.08, T:0.34


Consensus pattern (28 bp):   
AAAACTTTTTTTTTTCGACGCAAAACAC

Done.