Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012839.1 Corchorus olitorius cultivar O-4 contig12872, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34300

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
982--1030
21
2.4
20
83
6
62
51
8
16
24
1.71
1121--1227
27
3.9
28
78
10
114
38
24
19
17
1.93
2540--2580
15
2.6
16
81
18
50
63
7
9
19
1.48
4461--4492
12
2.7
12
100
0
64
68
6
18
6
1.32
5184--5208
13
1.9
13
100
0
50
48
0
12
40
1.40
6649--6857
108
1.9
108
99
0
409
41
19
19
20
1.91
11559--11599
22
2.0
21
85
9
57
24
9
14
51
1.72
16538--16604
31
2.2
30
86
5
98
58
17
5
17
1.59
18957--18998
22
1.9
22
100
0
84
42
26
7
23
1.80
23483--23527
14
3.5
12
84
9
54
31
0
11
57
1.33
28182--28226
22
2.0
22
87
8
65
71
0
20
8
1.12
29635--29679
14
3.5
12
84
9
54
31
0
11
57
1.33

Tables:   1

The End!