Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012841.1 Corchorus olitorius cultivar O-4 contig12874, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26616

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--27
2
13.5
2
100
0
54
48
0
0
51
1.00
1716--1754
20
2.0
20
100
0
78
56
5
7
30
1.49
4395--4455
24
2.5
24
89
0
95
24
22
0
52
1.47
4353--4511
16
10.1
16
67
12
69
22
15
0
61
1.39
14790--15258
54
8.7
54
80
9
453
29
18
20
31
1.96
14790--15258
163
2.9
159
83
7
565
29
18
20
31
1.96
14800--15208
217
1.9
215
86
4
565
30
19
20
30
1.97
16646--16805
16
10.9
15
68
16
70
23
16
0
60
1.35
16691--16804
8
14.6
8
72
10
76
21
15
0
62
1.33
16689--16748
24
2.5
24
88
0
93
25
23
0
51
1.48
16767--16818
20
2.6
20
84
6
70
19
7
0
73
1.07
16740--16799
12
5.2
12
74
11
54
20
8
0
71
1.11
16769--16815
16
2.9
16
84
6
60
21
8
0
70
1.14
21805--21882
29
2.7
29
91
0
120
17
14
24
43
1.86

Tables:   1

The End!