Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012845.1 Corchorus olitorius cultivar O-4 contig12878, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29684

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1568--1613
23
2.1
22
88
11
69
63
4
0
32
1.14
3091--3162
17
4.2
17
89
7
92
36
19
20
23
1.95
5186--5213
14
2.0
14
100
0
56
21
21
28
28
1.99
5237--5264
14
2.0
14
100
0
56
21
21
28
28
1.99
5279--5355
40
1.9
40
89
0
118
23
22
20
33
1.97
5332--5360
14
2.1
14
100
0
58
20
24
27
27
1.99
5331--5371
14
2.7
15
85
14
57
19
21
24
34
1.97
5402--5474
22
3.0
24
84
15
96
30
24
5
39
1.78
9709--9807
48
2.1
48
90
0
153
21
32
9
37
1.85
10110--10149
2
19.5
2
94
5
71
47
0
2
50
1.14
14273--14311
20
2.0
20
100
0
78
56
0
28
15
1.40
15158--15229
36
2.0
36
100
0
144
41
11
2
44
1.54
15591--15835
84
2.9
84
88
1
348
44
24
7
24
1.80
15551--15826
43
6.6
42
74
15
214
42
24
7
25
1.81
19904--19950
24
2.0
24
87
8
69
10
40
8
40
1.70
22304--22332
13
2.2
13
100
0
58
0
17
0
82
0.66
22326--22352
10
2.7
10
100
0
54
7
37
0
55
1.28
25848--25893
24
1.9
24
90
0
74
52
0
45
2
1.13
27472--27499
14
2.0
14
100
0
56
28
28
0
42
1.56
29655--29683
2
14.5
2
100
0
58
48
0
51
0
1.00

Tables:   1

The End!