Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012848.1 Corchorus olitorius cultivar O-4 contig12881, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52150

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5591--5626
3
12.3
3
94
5
65
63
0
36
0
0.94
8575--8714
31
4.5
31
79
1
129
18
22
25
33
1.97
8656--8739
31
2.7
31
90
1
125
15
26
23
34
1.95
9790--9902
56
2.0
56
100
0
226
26
27
21
24
1.99
11794--11870
29
2.6
29
79
6
82
32
24
10
32
1.89
11795--11914
31
3.9
31
72
15
97
29
23
12
35
1.91
12142--12214
28
2.5
30
80
11
87
32
12
24
30
1.92
14711--14762
26
2.0
26
96
0
95
48
11
15
25
1.78
20947--20994
24
2.0
24
95
0
87
35
14
16
33
1.89
27026--27189
31
5.3
31
81
5
170
18
21
23
36
1.95
28869--28894
13
2.0
13
100
0
52
23
15
7
53
1.67
33279--35638
330
7.2
328
78
6
2224
33
15
15
35
1.89
33355--35638
656
3.5
652
82
8
2492
33
15
15
36
1.89
37593--37628
18
2.0
18
94
0
63
36
33
0
30
1.58
45900--48248
334
7.0
330
79
6
2052
33
14
15
36
1.88
48289--49153
333
2.6
333
87
3
1179
32
15
15
36
1.89
48289--49153
332
2.6
331
87
3
1191
32
15
15
36
1.89
49433--52129
333
8.2
331
83
4
3302
33
14
15
36
1.88
49433--52129
664
4.1
663
85
4
3600
33
14
15
36
1.88

Tables:   1

The End!