Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01012850.1 Corchorus olitorius cultivar O-4 contig12883, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106561
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Found at i:653 original size:333 final size:330
Alignment explanation
Indices: 15--896 Score: 1202
Period size: 333 Copynumber: 2.7 Consensus size: 330
5 AATTCAGAAC
* * *
15 CCTTCAATCTTTCTGGCTTTGAATTATATATATTTTATTAGTG--TTGTGACCAAAAATTGAGGA
1 CCTTCAATCTTTTTGTCTTTGAATTATATAT-TTTTA-T-GTGAATTGTGGCCAAAAATT-AGGA
* * * * * *
78 AAAATTTTCCGGATCAATTTTTGCAAAATTTTAGCAGAAATCGTATAGTTTCCATTACGGCTTTA
62 AAAATTTTCCGGATCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTTTTCATCACGGTTTTA
* * * * *
143 AGCTAAAAACACGTTTCG-GGACACCGACTTAGTTTTGTATGATTTTTTGG-ACAAAGACTCCTT
127 AGCTAAAAACGCGTTTCGAGG-CCCCGACTCAGTTTTGCATGA-TTTTTGGCACGAAGACTCCTT
* * *
206 GAAATATTTATATTCATCTGACCAAATCTCAGCCACTTTGGATTTAAGGATTTGTTTTTACGAGC
190 GAAATATCTATATTCATCTGACCAAATTTAAGCCACTTTGGATTTAAGGATTTGTTTTTACGAGC
* *
271 ATTTGTATCATGTTTCTATTTAATTCAAAATTAATTAAGAAAGAAATTGGAAAAACGATATTAAA
255 ATCTGAATCATGTTTCTATTTAATTCAAAATTAATTAAGAAAGAAATTGGAAAAACGATATTAAA
**
336 AGGGTGAAAAA
320 AGCCTGAAAAA
*
347 CCTTTCAAGCTTTTTGTCTTTGAATTATATATTTTCTATGTGAATTGTGGCCAAAAATTAGGAAA
1 CC-TTCAATCTTTTTGTCTTTGAATTATATATTTT-TATGTGAATTGTGGCCAAAAATTAGG-AA
* * *
412 AAAATTTCCGGATTAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTTTTCATCACGGTTTTAG
63 AAATTTTCCGGATCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTTTTCATCACGGTTTTAA
*
477 GCTAAAAACGCGTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCACGAAGACTCCTTCAA
128 GCTAAAAACGCGTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCACGAAGACTCCTT-GA
* * *
542 AATATCTATATTCATCTGACCAAATTTAAGCCACTTTTGTTTTAAGGATTTGTTTTTACTAGCAT
192 AATATCTATATTCATCTGACCAAATTTAAGCCACTTTGGATTTAAGGATTTGTTTTTACGAGCAT
** * * *
607 CTGAATCATGTTTCTATTTAATTTGAAATTAATTCAGAAA-AAATTGGAAAATCGATATTAGAAG
257 CTGAATCATGTTTCTATTTAATTCAAAATTAATTAAGAAAGAAATTGGAAAAACGATATTAAAAG
* *
671 CCTTAAAAG
322 CCTGAAAAA
* * * * *
680 CCCTCAATCTTTTTGTCTTTGAATTATATATTTTTATGAGAATTTTGGCCAAATAGTGAGGAAAA
1 CCTTCAATCTTTTTGTCTTTGAATTATATATTTTTATGTGAATTGTGGCCAAA-AATTAGGAAAA
* * *
745 ATTTTCTGAATCAATTTTTG-AAAATTTTAGTCGAAATCGTGTACTTTTCATCACGGTTTTAAGC
65 ATTTTCCGGATCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTTTTCATCACGGTTTTAAGC
* *
809 TAAAAACGCGTTTC-AGGCCCCGGCTCAGTTTTGCATGATTTTTGGCACGAATACTCCTTGAAAT
130 TAAAAACGCGTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCACGAAGACTCCTTGAAAT
873 ATCTATATTCATCTGACCAAATTT
195 ATCTATATTCATCTGACCAAATTT
897 TTTTGGCTAT
Statistics
Matches: 490, Mismatches: 51, Indels: 22
0.87 0.09 0.04
Matches are distributed among these distances:
328 28 0.06
329 43 0.09
330 56 0.11
331 40 0.08
332 51 0.10
333 175 0.36
334 97 0.20
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (330 bp):
CCTTCAATCTTTTTGTCTTTGAATTATATATTTTTATGTGAATTGTGGCCAAAAATTAGGAAAAA
TTTTCCGGATCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTTTTCATCACGGTTTTAAGCT
AAAAACGCGTTTCGAGGCCCCGACTCAGTTTTGCATGATTTTTGGCACGAAGACTCCTTGAAATA
TCTATATTCATCTGACCAAATTTAAGCCACTTTGGATTTAAGGATTTGTTTTTACGAGCATCTGA
ATCATGTTTCTATTTAATTCAAAATTAATTAAGAAAGAAATTGGAAAAACGATATTAAAAGCCTG
AAAAA
Found at i:1901 original size:34 final size:34
Alignment explanation
Indices: 1858--1926 Score: 104
Period size: 34 Copynumber: 2.0 Consensus size: 34
1848 CCTGTCTAAA
*
1858 GATTAGCCTCATTAATCTGAGAAC-AATTGGATAG
1 GATTAGCCTCATTAATCTAAGAACAAATT-GATAG
*
1892 GATTAGCCTCATTAATTTAAGAACAAATTGATAG
1 GATTAGCCTCATTAATCTAAGAACAAATTGATAG
1926 G
1 G
1927 GGTATTTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
34 28 0.88
35 4 0.12
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (34 bp):
GATTAGCCTCATTAATCTAAGAACAAATTGATAG
Found at i:2900 original size:16 final size:16
Alignment explanation
Indices: 2879--2913 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
2869 GATTCCTGAC
*
2879 TATTTTTTTAAAAAAA
1 TATTTTTTAAAAAAAA
2895 TATTTTTTAAAAAAAA
1 TATTTTTTAAAAAAAA
2911 TAT
1 TAT
2914 GACGTGGCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TATTTTTTAAAAAAAA
Found at i:3455 original size:16 final size:17
Alignment explanation
Indices: 3434--3467 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
3424 TTACGATTAA
3434 AAAAAAGAAAAAA-AAG
1 AAAAAAGAAAAAAGAAG
3450 AAAAAAGAAAAAAGAAG
1 AAAAAAGAAAAAAGAAG
3467 A
1 A
3468 GTTTACACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (17 bp):
AAAAAAGAAAAAAGAAG
Found at i:8728 original size:31 final size:32
Alignment explanation
Indices: 8692--8763 Score: 119
Period size: 32 Copynumber: 2.3 Consensus size: 32
8682 ATAATGTGAG
*
8692 TTGGGCTCAATAATCCAA-TTTTAACGTGTTA
1 TTGGGCTCAACAATCCAATTTTTAACGTGTTA
*
8723 TTGGGCTCAACAATCCAATTTTTAACGTGTTC
1 TTGGGCTCAACAATCCAATTTTTAACGTGTTA
8755 TTGGGCTCA
1 TTGGGCTCA
8764 TCATACGATT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
31 17 0.45
32 21 0.55
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (32 bp):
TTGGGCTCAACAATCCAATTTTTAACGTGTTA
Found at i:9850 original size:15 final size:15
Alignment explanation
Indices: 9830--9886 Score: 87
Period size: 15 Copynumber: 3.8 Consensus size: 15
9820 TCCCACTTCC
9830 TCCGAAAATGAGTCA
1 TCCGAAAATGAGTCA
*
9845 TCCGAATATGAGTCA
1 TCCGAAAATGAGTCA
9860 TCCGAAAATGAGTCA
1 TCCGAAAATGAGTCA
**
9875 TTTGAAAATGAG
1 TCCGAAAATGAG
9887 CCATTTGAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 38 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.25
Consensus pattern (15 bp):
TCCGAAAATGAGTCA
Found at i:9886 original size:30 final size:30
Alignment explanation
Indices: 9830--9912 Score: 94
Period size: 30 Copynumber: 2.8 Consensus size: 30
9820 TCCCACTTCC
** * *
9830 TCCGAAAATGAGTCATCCGAATATGAGTCA
1 TCCGAAAATGAGTCATTTGAAAATGAGCCA
9860 TCCGAAAATGAGTCATTTGAAAATGAGCCA
1 TCCGAAAATGAGTCATTTGAAAATGAGCCA
** * *
9890 TTTGAAAATCAGCCATTTGAAAA
1 TCCGAAAATGAGTCATTTGAAAA
9913 GTCAGTCTTG
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.40, C:0.17, G:0.18, T:0.25
Consensus pattern (30 bp):
TCCGAAAATGAGTCATTTGAAAATGAGCCA
Found at i:9891 original size:15 final size:15
Alignment explanation
Indices: 9863--9912 Score: 82
Period size: 15 Copynumber: 3.3 Consensus size: 15
9853 TGAGTCATCC
*
9863 GAAAATGAGTCATTT
1 GAAAATGAGCCATTT
9878 GAAAATGAGCCATTT
1 GAAAATGAGCCATTT
*
9893 GAAAATCAGCCATTT
1 GAAAATGAGCCATTT
9908 GAAAA
1 GAAAA
9913 GTCAGTCTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.44, C:0.12, G:0.18, T:0.26
Consensus pattern (15 bp):
GAAAATGAGCCATTT
Found at i:12153 original size:1 final size:1
Alignment explanation
Indices: 12149--12189 Score: 82
Period size: 1 Copynumber: 41.0 Consensus size: 1
12139 GATTTTTTAG
12149 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
12190 AATATGGAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 40 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:38925 original size:27 final size:27
Alignment explanation
Indices: 38894--38947 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
38884 CACAAAGAAA
38894 TATGAACTAACACAAACATAATAATAT
1 TATGAACTAACACAAACATAATAATAT
* *
38921 TATGAACTAACATAAACATAATCATAT
1 TATGAACTAACACAAACATAATAATAT
38948 AAATCTCACC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.54, C:0.15, G:0.04, T:0.28
Consensus pattern (27 bp):
TATGAACTAACACAAACATAATAATAT
Found at i:49375 original size:24 final size:22
Alignment explanation
Indices: 49340--49408 Score: 120
Period size: 22 Copynumber: 3.0 Consensus size: 22
49330 AGAAATCGAC
49340 TAATTTTTTCAAGTCAATCCAA
1 TAATTTTTTCAAGTCAATCCAA
49362 TAATTTTTTTTCAAGTCAATCCAA
1 TAA--TTTTTTCAAGTCAATCCAA
49386 TAATTTTTTCAAGTCAATCCAA
1 TAATTTTTTCAAGTCAATCCAA
49408 T
1 T
49409 GGCTATTAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
22 23 0.51
24 22 0.49
ACGTcount: A:0.35, C:0.17, G:0.04, T:0.43
Consensus pattern (22 bp):
TAATTTTTTCAAGTCAATCCAA
Found at i:51220 original size:14 final size:13
Alignment explanation
Indices: 51201--51240 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 13
51191 GGATTTTTTA
51201 AGAGAGAGAGAGTG
1 AGAGAGA-AGAGTG
51215 AGAGAGAAGAGTG
1 AGAGAGAAGAGTG
51228 ATGAGAGGAAGAG
1 A-GAGA-GAAGAG
51241 GAAAGAGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.29
14 11 0.46
15 6 0.25
ACGTcount: A:0.45, C:0.00, G:0.47, T:0.07
Consensus pattern (13 bp):
AGAGAGAAGAGTG
Found at i:57033 original size:32 final size:32
Alignment explanation
Indices: 56997--57058 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
56987 ATTAAATGTG
56997 TTATCACCTCGAAACACATTTATTAGTGAAAA
1 TTATCACCTCGAAACACATTTATTAGTGAAAA
* * *
57029 TTATCATCTTGATACACATTTATTAGTGAA
1 TTATCACCTCGAAACACATTTATTAGTGAA
57059 CATTTTTATG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (32 bp):
TTATCACCTCGAAACACATTTATTAGTGAAAA
Found at i:72347 original size:23 final size:24
Alignment explanation
Indices: 72306--72353 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
72296 ATCTAATTTT
*
72306 TCCCCTTTTTTTTTCTTAAT-TAA
1 TCCCCTTTTTTTATCTTAATCTAA
72329 TCCCCTTTTTTTAAT-TTAATCTAA
1 TCCCCTTTTTTT-ATCTTAATCTAA
72353 T
1 T
72354 TACTAACAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 17 0.77
24 5 0.23
ACGTcount: A:0.21, C:0.21, G:0.00, T:0.58
Consensus pattern (24 bp):
TCCCCTTTTTTTATCTTAATCTAA
Found at i:75623 original size:60 final size:60
Alignment explanation
Indices: 75559--75698 Score: 219
Period size: 60 Copynumber: 2.3 Consensus size: 60
75549 AACGTTTGTC
* * *
75559 AAAATGCTCAAATAAGGGTCCGATCTTTTAATTTA-ATCAAATAAGGGCCTAACGTTATCG
1 AAAATGCTCAAATAAGGGCCCGATCTCTTAATTTAGCT-AAATAAGGGCCTAACGTTATCG
* *
75619 AAAATGCTCAAATAAGAGCCCGATCTCTTAATTTGGCTAAATAAGGGCCTAACGTTATCG
1 AAAATGCTCAAATAAGGGCCCGATCTCTTAATTTAGCTAAATAAGGGCCTAACGTTATCG
75679 AAAATGCTCAAATAAGGGCC
1 AAAATGCTCAAATAAGGGCC
75699 TGGTGTCAGT
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
60 72 0.99
61 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (60 bp):
AAAATGCTCAAATAAGGGCCCGATCTCTTAATTTAGCTAAATAAGGGCCTAACGTTATCG
Found at i:75633 original size:31 final size:31
Alignment explanation
Indices: 75595--75699 Score: 110
Period size: 31 Copynumber: 3.5 Consensus size: 31
75585 TTTAATTTAA
75595 TCAAATAAGGGCCTAACGTTATCGAAAATGC
1 TCAAATAAGGGCCTAACGTTATCGAAAATGC
* * * * **
75626 TCAAATAAGAGCC---CGATCTCTTAATTTGGC
1 TCAAATAAGGGCCTAACGTTATC-GAAAAT-GC
75656 T-AAATAAGGGCCTAACGTTATCGAAAATGC
1 TCAAATAAGGGCCTAACGTTATCGAAAATGC
75686 TCAAATAAGGGCCT
1 TCAAATAAGGGCCT
75700 GGTGTCAGTT
Statistics
Matches: 56, Mismatches: 12, Indels: 12
0.70 0.15 0.15
Matches are distributed among these distances:
28 5 0.09
29 13 0.23
30 6 0.11
31 27 0.48
32 5 0.09
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (31 bp):
TCAAATAAGGGCCTAACGTTATCGAAAATGC
Found at i:75856 original size:31 final size:31
Alignment explanation
Indices: 75798--75856 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
75788 TTAAAAGACC
* * *
75798 AGACCCTTATTTGAGCATTTTGACAAATATT
1 AGACCCTTATTTGAACATATTAACAAATATT
75829 AGACCCTTATTTGAACA-ATTAACCAAAT
1 AGACCCTTATTTGAACATATTAA-CAAAT
75857 TAATTATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 3 0.12
31 21 0.88
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.34
Consensus pattern (31 bp):
AGACCCTTATTTGAACATATTAACAAATATT
Found at i:81016 original size:54 final size:54
Alignment explanation
Indices: 80956--81065 Score: 193
Period size: 54 Copynumber: 2.0 Consensus size: 54
80946 TTTTCTTCCA
* *
80956 TTTAACTTAATTACTATTACATATAAAATTTTACTTAAAATCGAAATTACTCTG
1 TTTAACTTAATTACTATTACACATAAAATTTTACTTAAAATCGAAATTACTATG
*
81010 TTTAACTTAATTACTATTACACATAAAATTTTACTTAAAATTGAAATTACTATG
1 TTTAACTTAATTACTATTACACATAAAATTTTACTTAAAATCGAAATTACTATG
81064 TT
1 TT
81066 CCAATCATAA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.41, C:0.12, G:0.04, T:0.44
Consensus pattern (54 bp):
TTTAACTTAATTACTATTACACATAAAATTTTACTTAAAATCGAAATTACTATG
Found at i:84678 original size:18 final size:18
Alignment explanation
Indices: 84655--84689 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
84645 GCAAATGTAC
*
84655 AAAAAACAAAG-GAAAAA
1 AAAAAAAAAAGAGAAAAA
84672 AAAAAAAAAAGAGAAAAA
1 AAAAAAAAAAGAGAAAAA
84690 GACCCTTTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.86, C:0.03, G:0.11, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAAGAGAAAAA
Found at i:94469 original size:21 final size:19
Alignment explanation
Indices: 94414--94471 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
94404 CTGTTCATCA
94414 ACTGTACAGATGAGATTAC
1 ACTGTACAGATGAGATTAC
* * * * *
94433 ACTGCATATATTAGATTAGGT
1 ACTGTACAGATGAGATTA--C
94454 ACTGTACAGATGAGATTA
1 ACTGTACAGATGAGATTA
94472 TTAGAGCAGC
Statistics
Matches: 28, Mismatches: 9, Indels: 2
0.72 0.23 0.05
Matches are distributed among these distances:
19 14 0.50
21 14 0.50
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (19 bp):
ACTGTACAGATGAGATTAC
Found at i:100359 original size:23 final size:23
Alignment explanation
Indices: 100333--100379 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
100323 CCTAATTTTG
*
100333 AATTAA-TTTAGCTACTTTTTTAA
1 AATTAATTTTAGCTA-TTTATTAA
100356 AATTAATTTTAGCTATTTATTAA
1 AATTAATTTTAGCTATTTATTAA
100379 A
1 A
100380 CGAAAACGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.38, C:0.06, G:0.04, T:0.51
Consensus pattern (23 bp):
AATTAATTTTAGCTATTTATTAA
Found at i:104223 original size:21 final size:21
Alignment explanation
Indices: 104182--104223 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
104172 GATCCGATTA
* **
104182 AATAGGGTTAGGGTATTGTAT
1 AATAGGATTAGGGTAGGGTAT
104203 AATAGGATTAGGGTAGGGTAT
1 AATAGGATTAGGGTAGGGTAT
104224 GGGTAGTGAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.36, T:0.33
Consensus pattern (21 bp):
AATAGGATTAGGGTAGGGTAT
Found at i:104338 original size:19 final size:19
Alignment explanation
Indices: 104318--104354 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
104308 AATTAATTAT
*
104318 TTTA-ATATTAAATTTTTA
1 TTTATATATTAAAATTTTA
104336 TTTATATATTAAAATTTTA
1 TTTATATATTAAAATTTTA
104355 CTTAAGAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TTTATATATTAAAATTTTA
Done.