Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012855.1 Corchorus olitorius cultivar O-4 contig12888, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 24374
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30


Found at i:9076 original size:28 final size:28

Alignment explanation


    Indices: 9044--9101  Score: 107
    Period size: 28  Copynumber: 2.1  Consensus size: 28

       9034 TTTCTTTTTA

                                        
       9044 CCAAATGGTCAAGGAGATAAATGTCACT
          1 CCAAATGGTCAAGGAGATAAATGTCACT

                                     *  
       9072 CCAAATGGTCAAGGAGATAAATGTCCCT
          1 CCAAATGGTCAAGGAGATAAATGTCACT

              
       9100 CC
          1 CC

       9102 TTTTCTTGCT


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  28   29  1.00

ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21


Consensus pattern (28 bp):   
CCAAATGGTCAAGGAGATAAATGTCACT

Found at i:16440 original size:6 final size:6

Alignment explanation


    Indices: 16429--16459  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

      16419 ATTAATCAAT

                              *                 
      16429 CAGTTA CAGTTA CAGTAA CAGTTA CAGTTA C
          1 CAGTTA CAGTTA CAGTTA CAGTTA CAGTTA C

      16460 TAGCTTATAT


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.35, C:0.19, G:0.16, T:0.29


Consensus pattern (6 bp):   
CAGTTA
Done.