Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012857.1 Corchorus olitorius cultivar O-4 contig12890, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6423
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32


Found at i:357 original size:21 final size:21

Alignment explanation


    Indices: 314--360  Score: 60
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        304 AGGGATCGAG

                         *       
        314 CTGGGCGCTGAGCCTTGTCGC
          1 CTGGGCGCTGAGCATTGTCGC

                               *  
        335 CTGGGCGCTGAGGCATT-TTGC
          1 CTGGGCGCTGA-GCATTGTCGC

                 
        356 CTGGG
          1 CTGGG

        361 TGCCCAGCGG


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  21   19  0.83
  22    4  0.17

ACGTcount: A:0.06, C:0.28, G:0.40, T:0.26


Consensus pattern (21 bp):   
CTGGGCGCTGAGCATTGTCGC
Done.