Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012859.1 Corchorus olitorius cultivar O-4 contig12892, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4465
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31


Found at i:3559 original size:11 final size:11

Alignment explanation


    Indices: 3543--3590  Score: 50
    Period size: 11  Copynumber: 4.7  Consensus size: 11

       3533 GAAGTTCGTG

                       
       3543 TTTGAAGACCA
          1 TTTGAAGACCA

                    ** 
       3554 TTTGAAGATAA
          1 TTTGAAGACCA

                       
       3565 TTTGAAGA-C-
          1 TTTGAAGACCA

                       
       3574 -TTGAAGACCA
          1 TTTGAAGACCA

                    
       3584 -TTGAAGA
          1 TTTGAAGA

       3591 TTTATTTCAA


Statistics
Matches: 32,  Mismatches: 3, Indels: 5
        0.80            0.08        0.12

Matches are distributed among these distances:
   8    7  0.22
   9    1  0.03
  10    7  0.22
  11   17  0.53

ACGTcount: A:0.40, C:0.10, G:0.21, T:0.29


Consensus pattern (11 bp):   
TTTGAAGACCA
Done.