Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001286.1 Corchorus olitorius cultivar O-4 contig01286, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 790

Length: 1318
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33


Found at i:502 original size:13 final size:13

Alignment explanation


    Indices: 484--510  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

        474 AGGGTGTCAT

                         
        484 CCATATATAAGGG
          1 CCATATATAAGGG

                         
        497 CCATATATAAGGG
          1 CCATATATAAGGG

             
        510 C
          1 C

        511 TTATTTGGTC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22


Consensus pattern (13 bp):   
CCATATATAAGGG
Done.