Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012862.1 Corchorus olitorius cultivar O-4 contig12895, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104241

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4569--4617
15
2.9
17
82
14
57
51
2
4
42
1.32
4588--4811
115
1.9
115
90
3
353
48
4
10
37
1.57
4673--4939
144
1.9
142
92
3
446
48
5
9
36
1.59
13032--13068
17
2.2
17
90
0
56
59
0
0
40
0.97
20935--20971
2
18.0
2
94
5
65
48
0
2
48
1.15
28467--28543
30
2.5
31
91
6
115
35
28
10
25
1.89
39435--39473
12
3.1
12
82
10
51
48
0
0
51
1.00
44707--44925
57
3.8
57
84
1
278
26
26
21
24
2.00
44707--44926
114
1.9
114
86
1
316
26
26
22
24
2.00
48670--48845
86
2.1
85
89
3
264
52
2
10
34
1.50
50054--50144
42
2.2
42
96
2
166
32
4
20
41
1.72
54165--54199
11
3.2
11
83
0
52
77
17
5
0
0.96
56092--56145
28
2.2
22
68
31
54
46
24
3
25
1.69
60715--61077
181
2.0
184
90
4
572
34
11
37
16
1.85
64855--64886
16
2.0
16
100
0
64
50
6
12
31
1.65
65358--65420
30
2.1
30
90
0
99
46
12
11
30
1.77
66991--67128
68
2.0
69
90
4
217
23
10
15
50
1.74
67212--67241
2
15.0
2
100
0
60
50
0
0
50
1.00
76550--76575
11
2.4
11
100
0
52
7
15
7
69
1.35
77786--77817
13
2.5
13
89
0
55
6
6
12
75
1.19
80164--80231
21
3.2
21
76
2
73
17
44
22
16
1.87
83141--83166
11
2.4
11
100
0
52
7
15
7
69
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
89712--89743
5
6.8
5
89
10
50
84
0
15
0
0.63
89712--89743
14
2.3
14
94
0
55
84
0
15
0
0.63
95017--95109
45
2.2
43
83
9
111
37
21
5
35
1.76

Tables:   1

The End!