Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012863.1 Corchorus olitorius cultivar O-4 contig12896, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27093

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
555--607
7
7.4
7
80
16
56
84
0
11
3
0.73
555--608
15
3.7
15
82
7
67
85
0
11
3
0.73
555--611
9
6.4
9
74
11
55
84
0
12
3
0.75
555--611
17
3.2
17
78
11
62
84
0
12
3
0.75
2825--5044
949
2.3
953
91
4
3654
31
18
14
35
1.91
8656--8780
27
5.5
21
70
21
67
42
16
4
37
1.66
8671--8782
6
19.2
6
78
15
119
43
16
3
36
1.65
8677--8794
27
4.1
27
78
12
128
41
16
4
37
1.68
8656--8761
33
3.2
33
97
0
194
41
15
4
38
1.68
8743--8782
21
1.9
21
100
0
80
47
17
0
35
1.48
8744--8787
21
2.1
21
91
0
70
45
20
2
31
1.64
23313--23365
26
2.0
26
92
0
88
28
9
32
30
1.88
23801--23972
53
3.1
53
75
19
168
33
20
11
33
1.89
23831--23955
63
2.0
64
87
7
184
33
19
11
36
1.87
23733--23972
116
2.1
116
82
4
288
36
20
10
33
1.86
23943--24001
29
2.0
29
100
0
118
37
25
10
27
1.88

Tables:   1

The End!