Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012864.1 Corchorus olitorius cultivar O-4 contig12897, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35835

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5209--5240
16
2.0
16
100
0
64
56
0
0
43
0.99
5211--5240
5
5.8
5
92
7
51
56
0
0
43
0.99
5574--5703
45
2.9
45
90
0
215
39
20
6
33
1.78
7619--7655
2
19.0
2
94
5
67
48
0
0
51
1.00
8162--8213
24
2.3
23
81
18
65
53
3
0
42
1.19
11921--11997
39
2.0
39
89
5
120
19
29
6
44
1.76
13925--13954
13
2.3
13
94
0
51
26
13
3
56
1.52
18572--18628
28
2.2
26
84
9
71
0
17
1
80
0.79
24957--25032
36
2.1
36
92
0
125
14
39
40
5
1.68
25118--25165
24
1.9
26
84
16
66
77
0
8
14
0.99
27862--27896
18
2.0
17
94
5
61
0
14
0
85
0.59
29927--29952
13
2.0
13
100
0
52
38
0
15
46
1.46
32719--32858
48
2.9
48
86
7
180
29
13
6
50
1.66
35769--35835
21
3.2
21
64
16
57
50
14
5
28
1.66

Tables:   1

The End!