Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012866.1 Corchorus olitorius cultivar O-4 contig12899, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38952

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5906--5930
2
12.5
2
100
0
50
52
0
0
48
1.00
11605--11663
26
2.3
26
85
5
75
32
1
5
61
1.28
14328--14499
29
5.9
29
84
4
184
16
18
25
38
1.92
14325--14466
60
2.4
58
84
2
194
17
19
26
37
1.93
14333--14499
89
1.9
89
82
2
210
16
17
26
39
1.91
16395--16440
9
5.2
8
82
17
56
80
2
15
2
0.91
16554--16587
15
2.2
16
94
5
61
41
0
35
23
1.55
21309--21400
33
2.8
33
82
8
100
10
47
32
8
1.69
22440--22477
16
2.4
17
87
12
55
34
39
21
5
1.76
23962--24015
13
4.0
13
78
21
58
61
0
37
1
1.07
24715--24749
18
1.9
18
88
11
54
45
20
20
14
1.85
26116--26168
22
2.5
22
84
3
63
20
50
16
11
1.76
27050--27085
18
2.1
18
89
5
56
44
5
11
38
1.63
27962--28001
18
2.2
19
90
4
64
47
0
22
30
1.52
30756--30811
25
2.2
25
87
6
76
7
8
3
80
1.01
31938--31986
21
2.3
21
82
6
55
40
16
28
14
1.87
36717--36759
3
14.3
3
100
0
86
67
0
0
32
0.91

Tables:   1

The End!