Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012867.1 Corchorus olitorius cultivar O-4 contig12900, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5678
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35


Found at i:3342 original size:80 final size:80

Alignment explanation


    Indices: 3245--3392  Score: 235
    Period size: 80  Copynumber: 1.9  Consensus size: 80

       3235 CTGCAAAGTG

                        *                    *                               
       3245 GAAAATAATGCTTTGCAAAGT-GAAAAGAATCTCTACAAAGATGTTTCCAATTATATCAATAGTG
          1 GAAAATAATGCTCTGCAAAGTAG-AAAGAATCTATACAAAGATGTTTCCAATTATATCAATAGTG

                            
       3309 CAAAGCTGAAGTTGAA
         65 CAAAGCTGAAGTTGAA

                                              *                   *   *      
       3325 GAAAATAATGCTCTGCAAAGTAGAAAGAATCTATGCAAAGATGTTTCCAATTATTTCATTAGTGC
          1 GAAAATAATGCTCTGCAAAGTAGAAAGAATCTATACAAAGATGTTTCCAATTATATCAATAGTGC

               
       3390 AAA
         66 AAA

       3393 ACACTTAGAA


Statistics
Matches: 62,  Mismatches: 5, Indels: 2
        0.90            0.07        0.03

Matches are distributed among these distances:
  80   61  0.98
  81    1  0.02

ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28


Consensus pattern (80 bp):   
GAAAATAATGCTCTGCAAAGTAGAAAGAATCTATACAAAGATGTTTCCAATTATATCAATAGTGC
AAAGCTGAAGTTGAA
Done.