Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012873.1 Corchorus olitorius cultivar O-4 contig12906, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46473

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2434--2592
79
2.0
79
97
0
300
27
14
16
42
1.87
5904--5966
32
2.0
32
96
0
117
57
12
9
20
1.63
5837--6092
126
2.0
126
99
0
503
50
19
11
18
1.76
6030--6095
32
2.1
32
100
0
132
56
12
12
19
1.67
12858--12894
7
5.3
7
100
0
74
0
13
0
86
0.57
14533--14600
27
2.6
26
81
9
84
54
10
7
27
1.61
15829--15861
16
2.1
17
88
11
52
63
18
0
18
1.31
17439--17474
18
2.0
18
100
0
72
16
5
27
50
1.68
17746--17777
15
2.1
15
100
0
64
28
21
25
25
1.99
17819--17888
30
2.3
31
80
7
81
35
18
14
31
1.91
18113--18169
3
18.0
3
85
7
69
61
1
0
36
1.07
19310--19343
14
2.4
14
95
0
59
23
8
0
67
1.18
19371--19401
15
2.1
15
100
0
62
25
6
6
61
1.45
27685--27839
72
2.2
72
95
2
276
49
13
9
27
1.73
34282--34323
20
2.0
22
86
9
61
33
0
7
59
1.25
43360--43397
15
2.7
14
88
11
60
44
13
0
42
1.43
43365--43397
7
4.7
7
89
10
50
45
12
0
42
1.41
44024--44516
262
1.9
261
93
2
855
30
16
14
39
1.88

Tables:   1

The End!