Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012874.1 Corchorus olitorius cultivar O-4 contig12907, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11202
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32


Found at i:6905 original size:18 final size:19

Alignment explanation


    Indices: 6871--6908  Score: 60
    Period size: 18  Copynumber: 2.1  Consensus size: 19

       6861 GTCCATCGTT

                      *        
       6871 ATCTCCATGGTCTCCATGC
          1 ATCTCCATGGCCTCCATGC

                               
       6890 ATCTCCAT-GCCTCCATGC
          1 ATCTCCATGGCCTCCATGC

             
       6908 A
          1 A

       6909 ACCCATGCAC


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  18   10  0.56
  19    8  0.44

ACGTcount: A:0.18, C:0.39, G:0.13, T:0.29


Consensus pattern (19 bp):   
ATCTCCATGGCCTCCATGC
Done.