Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001288.1 Corchorus olitorius cultivar O-4 contig01288, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 637

Length: 1063
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.28


Found at i:322 original size:21 final size:21

Alignment explanation


    Indices: 298--431  Score: 191
    Period size: 21  Copynumber: 6.4  Consensus size: 21

        288 CTTAGGCAAT

                         *       
        298 TCCAATGAGCTTGAAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *           *
        319 TCCAATGATCTTGGAACCTTT
          1 TCCAATGAGCTTGGAACCTTC

                    *            
        340 TCCAATGAACTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                    *            
        361 TCCAATGAACTTGGAACCTTC
          1 TCCAATGAGCTTGGAACCTTC

                                  
        382 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                                  
        403 TCCAATGAGCTTGGAA-CTTGC
          1 TCCAATGAGCTTGGAACCTT-C

                    
        424 TCCAATGA
          1 TCCAATGA

        432 ACTTCTAGCA


Statistics
Matches: 106,  Mismatches: 6, Indels: 2
        0.93            0.05        0.02

Matches are distributed among these distances:
  20    3  0.03
  21  103  0.97

ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30


Consensus pattern (21 bp):   
TCCAATGAGCTTGGAACCTTC

Done.