Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012880.1 Corchorus olitorius cultivar O-4 contig12913, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7367
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31


Found at i:2379 original size:20 final size:18

Alignment explanation


    Indices: 2340--2375  Score: 54
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       2330 CTAGCTCTAA

                          *   
       2340 AACTAGAAGAAAAACTAG
          1 AACTAGAAGAAAAAATAG

                              
       2358 AACTAGAAGAGAAAAATA
          1 AACTAGAAGA-AAAAATA

       2376 AGAAGAGAAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18   10  0.62
  19    6  0.38

ACGTcount: A:0.64, C:0.08, G:0.17, T:0.11


Consensus pattern (18 bp):   
AACTAGAAGAAAAAATAG
Done.