Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012881.1 Corchorus olitorius cultivar O-4 contig12914, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102734

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
495--531
17
2.2
17
90
0
56
43
0
0
56
0.99
523--580
22
2.7
21
80
17
73
60
1
0
37
1.07
500--578
7
11.1
7
75
17
65
53
1
0
45
1.08
691--715
12
2.1
12
100
0
50
24
20
16
40
1.91
14338--14393
29
2.0
28
92
3
94
28
10
21
39
1.87
15604--15654
10
5.1
10
100
0
102
0
19
58
21
1.39
29158--29190
15
2.2
15
100
0
66
30
6
0
63
1.18
32334--32367
16
2.1
17
88
5
52
35
14
17
32
1.91
34414--34488
28
2.7
27
74
11
80
38
16
22
22
1.92
34730--34819
46
2.0
46
100
0
180
36
13
16
33
1.88
35311--35366
22
2.5
22
78
16
62
3
19
1
75
1.05
35331--35382
13
3.9
13
85
5
68
3
21
0
75
0.97
35330--35389
27
2.2
27
80
11
70
3
21
0
75
0.95
35331--35393
14
4.5
14
80
11
60
3
22
0
74
0.96
36337--36376
19
2.1
19
100
0
80
32
15
0
52
1.43
41768--43020
636
2.0
630
97
0
2344
28
20
19
30
1.97
43090--44174
445
2.5
441
84
5
1404
30
14
13
41
1.84
49372--49405
2
17.5
2
93
6
61
50
0
0
50
1.00
51458--51514
29
2.0
29
96
0
105
38
12
10
38
1.77
51916--51974
22
2.7
22
86
0
82
25
13
18
42
1.87
53326--53361
3
12.0
3
87
0
54
36
2
0
61
1.11
54537--54571
18
1.9
18
94
0
61
45
8
0
45
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55717--55864
74
2.0
74
90
2
235
18
8
19
54
1.68
59229--59272
21
2.1
21
87
8
63
50
11
9
29
1.69
68586--68666
39
2.0
40
90
2
128
50
7
3
38
1.48
68775--69181
199
2.0
203
96
1
750
36
10
8
44
1.70
69690--69759
36
1.9
36
91
0
113
60
8
10
21
1.55
72099--72138
21
2.0
21
85
9
57
35
12
0
52
1.39
76423--76475
14
3.7
14
77
7
54
47
3
1
47
1.31
76898--77080
22
8.2
22
69
9
84
34
9
17
38
1.82
77035--77080
24
2.0
23
87
8
67
36
6
17
39
1.76
77128--77169
22
1.9
22
85
9
59
42
7
16
33
1.75
77137--77524
44
8.7
43
69
13
121
39
10
15
34
1.82
77174--77533
22
16.2
21
68
15
86
39
10
16
34
1.82
77404--77569
87
1.9
87
83
2
217
40
10
13
34
1.80
77400--77534
22
6.2
22
77
5
112
40
10
14
34
1.80
77667--77946
22
12.6
22
68
17
134
42
8
13
35
1.76
78020--78103
22
3.8
22
75
6
71
35
13
15
35
1.86
93193--93264
27
2.7
27
86
0
99
38
26
16
18
1.91
94662--94789
59
2.2
59
88
5
188
39
7
17
35
1.77
96103--96163
30
2.0
30
100
0
122
42
3
13
40
1.60
100291--100323
16
2.0
17
94
5
59
66
0
0
33
0.92
101777--101823
20
2.2
22
77
7
53
48
4
10
36
1.57
101946--101996
21
2.6
19
80
19
61
52
3
13
29
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102701--102733
2
16.5
2
100
0
66
48
0
0
51
1.00

Tables:   1

The End!