Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01012884.1 Corchorus olitorius cultivar O-4 contig12917, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 20894
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:6500 original size:21 final size:21

Alignment explanation


    Indices: 6476--6524  Score: 55
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       6466 ATAGTTTAGA

                      *           
       6476 TTTAATTTACTTTGC-TTTATT
          1 TTTAATTTA-ATTGCATTTATT

                *             *  
       6497 TTTAGTTTAATTGCATTTCTT
          1 TTTAATTTAATTGCATTTATT

                   
       6518 TTTAATT
          1 TTTAATT

       6525 GTTCTATTTA


Statistics
Matches: 23,  Mismatches: 4, Indels: 2
        0.79            0.14        0.07

Matches are distributed among these distances:
  20    4  0.17
  21   19  0.83

ACGTcount: A:0.20, C:0.08, G:0.06, T:0.65


Consensus pattern (21 bp):   
TTTAATTTAATTGCATTTATT

Found at i:15402 original size:19 final size:18

Alignment explanation


    Indices: 15378--15413  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

      15368 TGAAGATTTA

                               
      15378 TTGAAGATAATTTGAAGAC
          1 TTGAAGATAA-TTGAAGAC

                    *        
      15397 TTGAAGATCATTGAAGA
          1 TTGAAGATAATTGAAGA

      15414 ATTATTTCCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    7  0.44
  19    9  0.56

ACGTcount: A:0.42, C:0.06, G:0.22, T:0.31


Consensus pattern (18 bp):   
TTGAAGATAATTGAAGAC
Done.