Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012887.1 Corchorus olitorius cultivar O-4 contig12920, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35747

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29--86
22
2.6
22
83
5
73
41
17
5
36
1.72
2637--2685
25
2.0
25
83
0
62
48
20
22
8
1.75
5044--5202
27
5.9
26
86
5
101
36
23
16
23
1.94
5075--5174
27
3.7
27
94
0
173
37
23
18
22
1.94
7800--7831
16
2.1
16
94
5
57
40
21
0
37
1.54
10623--10669
24
1.9
25
91
4
78
36
12
10
40
1.78
12558--12697
55
2.5
54
91
4
226
40
4
18
37
1.71
12856--12900
2
21.0
2
86
13
63
46
0
6
46
1.29
13895--13962
28
2.5
26
81
13
77
41
10
11
36
1.76
14364--14398
18
1.9
18
88
0
52
48
2
22
25
1.64
20055--20106
25
2.1
25
100
0
104
25
19
25
30
1.98
31910--32096
18
11.4
17
65
26
77
47
20
26
5
1.71
31881--32121
48
5.1
47
88
3
324
48
20
25
5
1.72
32005--32094
18
5.3
18
72
21
86
51
21
22
5
1.68
31881--32121
95
2.5
95
85
4
317
48
20
25
5
1.72
32637--32674
13
2.9
13
88
0
58
39
26
13
21
1.89
32667--32746
28
2.8
28
86
3
97
25
17
35
22
1.95
34956--35019
32
2.1
30
85
5
83
42
23
6
28
1.78
35290--35506
112
2.0
110
88
5
321
32
20
12
34
1.90

Tables:   1

The End!